Browse Element(s) Details


Os.11920.1.S1_s_at

Description gb:AK102569.1
DB_XREF= gi:32987778
TID=Os.11920.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.11920 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-206-F09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033097L18, full insert sequence.
FL= gb:AK102569.1 gb:AK105886.1 gb:AK061332.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3932011/11expressed protein
LOC_Os02g578501/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g39300OsAffx.26389.1.S1_at11/114+23169462..23173107heavy metal-associated domain containing protein, expressed
LOC_Os04g39300Os.50043.1.A1_at1/114+23169462..23173107heavy metal-associated domain containing protein, expressed
LOC_Os04g39310OsAffx.16205.1.S1_at1/114+23185581..23187098hypothetical protein
LOC_Os04g39310OsAffx.25292.1.S1_at1/114+23185581..23187098hypothetical protein
LOC_Os04g39320Os.11920.1.S1_s_at11/114+23189324..23191149expressed protein
LOC_Os04g39320Os.35433.1.S1_at11/114+23189324..23191149expressed protein
LOC_Os04g39330OsAffx.14199.1.S1_at10/114+23193937..23195374hypothetical protein
LOC_Os04g39340NANA4+23197922..23198374hypothetical protein
LOC_Os04g39350Os.12082.1.S1_at11/114+23203407..23204235heavy metal-associated domain containing protein, expressed
LOC_Os04g39360OsAffx.14201.1.S1_at11/114+23208927..23209592heavy metal-associated domain containing protein, expressed
LOC_Os04g39370OsAffx.4029.1.S1_at9/114+23211046..23212874heavy metal-associated domain containing protein
LOC_Os04g39370OsAffx.17908.1.S1_x_at1/114+23211046..23212874heavy metal-associated domain containing protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11920.1.S1_s_at--14--9171Chr04:23189849..23189873 (25 bp)
TGCGCCATCATGTAGCTGCACCAGC
LOC_Os04g39320
Os.11920.1.S1_s_at--48--4771Chr04:23189835..23189859 (25 bp)
GCTGCACCAGCTAGTGTACGATCGA
LOC_Os04g39320
Os.11920.1.S1_s_at--333--6391Chr04:23189766..23189790 (25 bp)
GATCGTCACGATGATCGGATGATCG
LOC_Os04g39320
Os.11920.1.S1_s_at--574--8011Chr04:23189742..23189766 (25 bp)
GGAGGACATATTGCGACCGAATCTA
LOC_Os04g39320
Os.11920.1.S1_s_at--627--5251Chr04:23189724..23189748 (25 bp)
GAATCTAGTAGCTGATTGTCCCAAT
LOC_Os04g39320
Os.11920.1.S1_s_at--137--6571Chr04:23189711..23189735 (25 bp)
GATTGTCCCAATCGATAACTGGCCC
LOC_Os04g39320
Os.11920.1.S1_s_at--460--9811Chr04:23189696..23189720 (25 bp)
TAACTGGCCCAAAGTACGTAGATAT
LOC_Os04g39320
Os.11920.1.S1_s_at--432--8671Chr04:23189658..23189682 (25 bp)
TGTGTGATGATGAGGCCGATTTGAT
LOC_Os04g39320
Os.11920.1.S1_s_at--1115--8412Chr04:23189645..23189669 (25 bp)
GGCCGATTTGATTCCGTGTGATTAC
LOC_Os04g39320
Os.11920.1.S1_s_at--1067--9472Chr11:21041783..21041805 (22 bp)
TCTGAAGTCTGAACGTTATATGTGC
NONE
Os.11920.1.S1_s_at--676--9771Chr04:23189475..23189499 (25 bp)
TAAGGTGCAAGCGACTTTATAGTTC
LOC_Os04g39320
Target Sequence 
TGCGCCATCATGTAGCTGCACCAGCTAGTGTACGATCGATGCTGCTTCTGCTCGCGCGCGAGCATGCCGGCCGTCGTCGT
CTCGATCGTCACGATGATCGGATGATCGGAGGACATATTGCGACCGAATCTAGTAGCTGATTGTCCCAATCGATAACTGG
CCCAAAGTACGTAGATATACCTTGAATTTTCTGTGTGATGATGAGGCCGATTTGATTCCGTGTGATTACTGAACAACAGA
CAGGTACGTACCTGTTGTCTGAAACTCTGAAGTCTGAACGTTATATGTGCAGTAGTATATGTGTAGTAGCTGCTCCCGGC
CTCCAAGTGTATACGGTGTGCAAGTGTAAATTAGGTGTACTAGGGAGATATATATAAGGTGCAAGCGACTTTATAGTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11920.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis