Browse Element(s) Details


OsAffx.26389.1.S1_at

Description tigr:9632.m03720
TID=OsAffx.26389.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3930011/11heavy metal-associated domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g39270Os.11637.1.S1_at11/114+23143067..23146611Indole-3-glycerol phosphate synthase, chloroplast precursor, putative, expressed
LOC_Os04g39280Os.53718.1.A1_at11/114+23148145..23152629Telomere-binding protein alpha subunit, central domain containing protein, expressed
LOC_Os04g39290OsAffx.14198.1.S1_at11/114+23163163..23164041heavy metal-associated domain containing protein, expressed
LOC_Os04g39300OsAffx.26389.1.S1_at11/114+23169462..23173107heavy metal-associated domain containing protein, expressed
LOC_Os04g39300Os.50043.1.A1_at1/114+23169462..23173107heavy metal-associated domain containing protein, expressed
LOC_Os04g39310OsAffx.16205.1.S1_at1/114+23185581..23187098hypothetical protein
LOC_Os04g39310OsAffx.25292.1.S1_at1/114+23185581..23187098hypothetical protein
LOC_Os04g39320Os.11920.1.S1_s_at11/114+23189324..23191149expressed protein
LOC_Os04g39320Os.35433.1.S1_at11/114+23189324..23191149expressed protein
LOC_Os04g39330OsAffx.14199.1.S1_at10/114+23193937..23195374hypothetical protein
LOC_Os04g39340NANA4+23197922..23198374hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0046872molecular_functionmetal ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26389.1.S1_at--574--2871Chr04:23170116..23170137 (22 bp)
AAGTGGCATCCACGGTCAACGGAGT
LOC_Os04g39300
OsAffx.26389.1.S1_at--584--9711Chr04:23170009..23170122 (25 bp)
TCAACGGAGTGCAGTCTGTCACGGT
LOC_Os04g39300
OsAffx.26389.1.S1_at--863--4411Chr04:23169932..23169956 (25 bp)
GCCAGCAGGCTGACCAGGAGGCTCA
LOC_Os04g39300
OsAffx.26389.1.S1_at--382--8931Chr04:23169922..23169946 (25 bp)
TGACCAGGAGGCTCAGGAACCACGT
LOC_Os04g39300
OsAffx.26389.1.S1_at--837--3471Chr04:23169918..23169942 (25 bp)
CAGGAGGCTCAGGAACCACGTCGGC
LOC_Os04g39300
OsAffx.26389.1.S1_at--757--8291Chr04:23169896..23169920 (25 bp)
GGCTACGCCGAGATAGTGGAGCTCA
LOC_Os04g39300
OsAffx.26389.1.S1_at--355--1271Chr04:23169886..23169910 (25 bp)
AGATAGTGGAGCTCACCACGTCGTC
LOC_Os04g39300
OsAffx.26389.1.S1_at--964--8451Chr04:23169601..23169625 (25 bp)
TGGCCGGCGGCTACACGTTGGACGT
LOC_Os04g39300
OsAffx.26389.1.S1_at--966--1811Chr04:23169565..23169589 (25 bp)
ACGCGGCGAACTACTCCCCGTTGAT
LOC_Os04g39300
OsAffx.26389.1.S1_at--501--9911Chr04:23169554..23169578 (25 bp)
TACTCCCCGTTGATCGAGCGGCACG
LOC_Os04g39300
OsAffx.26389.1.S1_at--372--151Chr04:23169514..23169538 (25 bp)
ATTACCCGGCGCATAGCTGCTGCTC
LOC_Os04g39300
Target Sequence 
AAGTGGCATCCACGGTCAACGGAGTGCAGTCTGTCACGGTGGCCGGCGAGGAGAGGAACCTGCTGCTGGTGATCGGCGAC
GGCGTGGTGGACGCCAGCAGGCTGACCAGGAGGCTCAGGAACCACGTCGGCTACGCCGAGATAGTGGAGCTCACCACGTC
GTCGTCGACGGCCGTGCCGCCCGTCGACGTAGCCGCCGCCGCAGTCACCGAGGACGCCGTGCGGCCGCGGTACCACGGCC
TCGTTGGGGGCGGCGGCGGCTTGCCATGGTTCGCGCGCGTCGGATGCCCCGTCACCGCCCACTCGGTGGTCGCCAGCCAC
GCCGCGCCGGCGGCGGCGCTGTGGCCGGGCGCCGGCGAGGTCGGCGGCAGCTGGGCGGCCTCGTACTCCGCTCATCCCAG
CCCATGCTACCGCTCCTCGCCGTTGGCCGGCGGCTACACGTTGGACGTGGCGCGCAGCCACGCGGCGAACTACTCCCCGT
TGATCGAGCGGCACGCCGGCCGCGGCGGCCATTACCCGGCGCATAGCTGCTGCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26389.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis