Browse Element(s) Details


OsAffx.14198.1.S1_at

Description tigr:9632.m03719
TID=OsAffx.14198.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3929011/11heavy metal-associated domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g39260Os.52690.1.S1_at11/114+23137894..23142718CAF1 family ribonuclease containing protein, expressed
LOC_Os04g39270Os.11637.1.S1_at11/114+23143067..23146611Indole-3-glycerol phosphate synthase, chloroplast precursor, putative, expressed
LOC_Os04g39280Os.53718.1.A1_at11/114+23148145..23152629Telomere-binding protein alpha subunit, central domain containing protein, expressed
LOC_Os04g39290OsAffx.14198.1.S1_at11/114+23163163..23164041heavy metal-associated domain containing protein, expressed
LOC_Os04g39300OsAffx.26389.1.S1_at11/114+23169462..23173107heavy metal-associated domain containing protein, expressed
LOC_Os04g39300Os.50043.1.A1_at1/114+23169462..23173107heavy metal-associated domain containing protein, expressed
LOC_Os04g39310OsAffx.16205.1.S1_at1/114+23185581..23187098hypothetical protein
LOC_Os04g39310OsAffx.25292.1.S1_at1/114+23185581..23187098hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14198.1.S1_at--636--4751Chr04:23163670..23163694 (25 bp)
GCTGACCAAGAAGCTGCGGAGGGAG
LOC_Os04g39290
OsAffx.14198.1.S1_at--704--891Chr04:23163638..23163662 (25 bp)
AGGCCGAGATACTGGAGCTGCGCAC
LOC_Os04g39290
OsAffx.14198.1.S1_at--496--4511Chr04:23163636..23163660 (25 bp)
GCCGAGATACTGGAGCTGCGCACGC
LOC_Os04g39290
OsAffx.14198.1.S1_at--611--1271Chr04:23163632..23163656 (25 bp)
AGATACTGGAGCTGCGCACGCTGGA
LOC_Os04g39290
OsAffx.14198.1.S1_at--38--6491Chr04:23163631..23163655 (25 bp)
GATACTGGAGCTGCGCACGCTGGAC
LOC_Os04g39290
OsAffx.14198.1.S1_at--636--7231Chr04:23163502..23163526 (25 bp)
GTCGCCGTACCACGGCTGGCACGGG
LOC_Os04g39290
OsAffx.14198.1.S1_at--310--7571Chr04:23163441..23163465 (25 bp)
GGGCGCATCATGTACCCGGTGACGA
LOC_Os04g39290
OsAffx.14198.1.S1_at--224--4591Chr04:23163439..23163463 (25 bp)
GCGCATCATGTACCCGGTGACGACG
LOC_Os04g39290
OsAffx.14198.1.S1_at--41--4711Chr04:23163368..23163392 (25 bp)
GCGGCGAGCAGTACAGGTCGTCCTC
LOC_Os04g39290
OsAffx.14198.1.S1_at--973--8371Chr04:23163366..23163390 (25 bp)
GGCGAGCAGTACAGGTCGTCCTCGC
LOC_Os04g39290
OsAffx.14198.1.S1_at--1064--2011Chr04:23163239..23163263 (25 bp)
ACTACTCGCCGATGGTGGAGCGGCA
LOC_Os04g39290
Target Sequence 
GCTGACCAAGAAGCTGCGGAGGGAGGTCGGGGAGGCCGAGATACTGGAGCTGCGCACGCTGGACGCCGGCGGCTCCCGCG
GCGGCGGGGGCGCGGCGTCGCTGCAGCTGATGACGGCGGCCGGCGCCCGCAACGGCAAGGGCGGCGGCGCCGTCGTGTTC
GCGCAGTCGTCGCCGTACCACGGCTGGCACGGGCACCCCGCCACTCCCGGGCGGAGCGTGCCCGGTGTGGGGCGCATCAT
GTACCCGGTGACGACGACGACGACGGCCACCGCGGCGAGCCCCGGCGCCGCGCGGTGGCCGGGCGGCGAGCAGTACAGGT
CGTCCTCGCCGCAGGCGGCGCTCTATTACCCCCGCAACCCCCCGAACGCGTACTACTACGGCGGCCTGGGCGTGCGCGAC
GGCCTCGCCGTGGCGCGAAGCCACCCGGCGAACTACTCGCCGATGGTGGAGCGGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14198.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis