Browse Element(s) Details


Os.53718.1.A1_at

Description gb:AK099483.1
DB_XREF= gi:32984692
TID=Os.53718.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53718 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013025N02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013025N02, full insert sequence.
FL= gb:AK099483.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3928011/11Telomere-binding protein alpha subunit, central domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g39250OsAffx.26388.1.S1_at11/114+23135334..23136788RNA recognition motif family protein, expressed
LOC_Os04g39260Os.52690.1.S1_at11/114+23137894..23142718CAF1 family ribonuclease containing protein, expressed
LOC_Os04g39270Os.11637.1.S1_at11/114+23143067..23146611Indole-3-glycerol phosphate synthase, chloroplast precursor, putative, expressed
LOC_Os04g39280Os.53718.1.A1_at11/114+23148145..23152629Telomere-binding protein alpha subunit, central domain containing protein, expressed
LOC_Os04g39290OsAffx.14198.1.S1_at11/114+23163163..23164041heavy metal-associated domain containing protein, expressed
LOC_Os04g39300OsAffx.26389.1.S1_at11/114+23169462..23173107heavy metal-associated domain containing protein, expressed
LOC_Os04g39300Os.50043.1.A1_at1/114+23169462..23173107heavy metal-associated domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53718.1.A1_at--650--2511Chr04:23149110..23149134 (25 bp)
AACATTGATGGAGTCGCTCACCCAT
LOC_Os04g39280
Os.53718.1.A1_at--923--6631Chr04:23148855..23148879 (25 bp)
GTTGTTGCAGCATATCCACGTGGAG
LOC_Os04g39280
Os.53718.1.A1_at--324--6651Chr04:23148787..23148811 (25 bp)
GTTGACTCTTGAGGATCCTACGGCA
LOC_Os04g39280
Os.53718.1.A1_at--114--5211Chr04:23148761..23148785 (25 bp)
GAATTCATGCGTACATCCACAAGGA
LOC_Os04g39280
Os.53718.1.A1_at--806--10351Chr04:23148511..23148535 (25 bp)
TTTTTGGTGGTTTCCTGACGGCAGA
LOC_Os04g39280
Os.53718.1.A1_at--217--6311Chr04:23148471..23148495 (25 bp)
GATGAACAAGCTTCTGGGTATCCCA
LOC_Os04g39280
Os.53718.1.A1_at--1050--5191Chr04:23148420..23148444 (25 bp)
GAATAGGAACCCACCTTGGATATGG
LOC_Os04g39280
Os.53718.1.A1_at--529--6671Chr04:23148394..23148418 (25 bp)
GTTGCTTGAAGTCTTACCGTCTGGA
LOC_Os04g39280
Os.53718.1.A1_at--198--1091Chr04:23148265..23148289 (25 bp)
AGTGGCATTTGCTTGTGGTACAGAC
LOC_Os04g39280
Os.53718.1.A1_at--698--5631Chr04:23148209..23148233 (25 bp)
GACAGCCTTTCGGTTGGTGCTACTA
LOC_Os04g39280
Os.53718.1.A1_at--1107--7771Chr04:23148194..23148218 (25 bp)
GGTGCTACTACCTACAATGTTACTG
LOC_Os04g39280
Target Sequence 
AACATTGATGGAGTCGCTCACCCATGGAGAGGTGACGCACAAATTCAAAACCTTGGTTCGAGTTGTTGCAGCATATCCAC
GTGGAGCTAGTCATCTTNGTTCACTATTGGCTGGCAATTGTTGTCTAAGGTTGACTCTTGAGGATCCTACGGCAAGAATT
CATGCGTACATCCACAAGGACGATGGGGCCAAATTTTTTGGTGGTTTCCTGACGGCAGAAGCTGTGATCAGAAAGATGAA
CAAGCTTCTGGGTATCCCAGAAGACACCGAGGAAGGTGCTCCATCGAATAGGAACCCACCTTGGATATGGTGTTGCTTGA
AGTCTTACCGTCTGGACAAGAACGATCCCTGGGGAAGCAGAAGGTATCGGATTTTTGGCACAGAGATCAGGGATTGAATA
GGGGAGAAAGATTTGGAGCAACTTGGAAATTACTGTGTACAGTGGCATTTGCTTGTGGTACAGACACGCAAATTGACTGA
GTTGTAACAGCTAGGTGACAGCCTTTCGGTTGGTGCTACTACCTACAATGTTACTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53718.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis