Browse Element(s) Details


Os.52690.1.S1_at

Description gb:AK068773.1
DB_XREF= gi:32978798
TID=Os.52690.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52690 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013158D23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013158D23, full insert sequence.
FL= gb:AK068773.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3926011/11CAF1 family ribonuclease containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g39240Os.22379.1.S1_at10/114+23112033..23117844expressed protein
LOC_Os04g39250OsAffx.26388.1.S1_at11/114+23135334..23136788RNA recognition motif family protein, expressed
LOC_Os04g39260Os.52690.1.S1_at11/114+23137894..23142718CAF1 family ribonuclease containing protein, expressed
LOC_Os04g39270Os.11637.1.S1_at11/114+23143067..23146611Indole-3-glycerol phosphate synthase, chloroplast precursor, putative, expressed
LOC_Os04g39280Os.53718.1.A1_at11/114+23148145..23152629Telomere-binding protein alpha subunit, central domain containing protein, expressed
LOC_Os04g39290OsAffx.14198.1.S1_at11/114+23163163..23164041heavy metal-associated domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009451biological_processRNA modification
GO:0004540molecular_functionribonuclease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52690.1.S1_at--720--6511Chr04:23138479..23138503 (25 bp)
GATTTCTTGGATCTGAAGGCTACCT
LOC_Os04g39260
Os.52690.1.S1_at--513--1131Chr04:23138440..23138464 (25 bp)
AGTGCTATTTCAGTCTTGCACCCTT
LOC_Os04g39260
Os.52690.1.S1_at--717--10731Chr04:23138425..23138449 (25 bp)
TTGCACCCTTTGTCAACTATACTGG
LOC_Os04g39260
Os.52690.1.S1_at--437--6491Chr04:23138371..23138395 (25 bp)
GATACCTACAGAGATATTTGCCGCT
LOC_Os04g39260
Os.52690.1.S1_at--320--8751Chr04:23138342..23138366 (25 bp)
TGTATCAAAGTTCTCCTTCGCGGAT
LOC_Os04g39260
Os.52690.1.S1_at--501--7311Chr04:23138232..23138256 (25 bp)
GTGCTCTTGATGGAACTGTGCCTGC
LOC_Os04g39260
Os.52690.1.S1_at--232--7951Chr04:23138138..23138162 (25 bp)
GGATATCTTAGATGCGCTACAGGAT
LOC_Os04g39260
Os.52690.1.S1_at--131--4991Chr04:23138080..23138104 (25 bp)
GCATGACTTACATTTTTGCCTTCTC
LOC_Os04g39260
Os.52690.1.S1_at--972--7551Chr04:23138052..23138076 (25 bp)
GGGCCTGTCTGCTCTGAATAACAAT
LOC_Os04g39260
Os.52690.1.S1_at--465--9031Chr04:23137962..23137986 (25 bp)
TGCACATGGTGCACTGTAGGCTACA
LOC_Os04g39260
Os.52690.1.S1_at--337--6931Chr04:23137947..23137971 (25 bp)
GTAGGCTACAGAACCTTTTACTGAT
LOC_Os04g39260
Target Sequence 
GATTTCTTGGATCTGAAGGCTACCTTAGAGAGTGCAGATAGTGCTATTTCAGTCTTGCACCCTTTGTCAACTATACTGGA
AGGAGGCAAAACACGAGCGGCAAAATATGATACCTACAGAGATATTTGCCGCTCCTCTGTATCAAAGTTCTCCTTCGCGG
ATCAAGCTGAAGCGGTTTGTTCAACTTCAAACAGCGAGTCCAAGTTCAAGGAGTGCAATGCTGCTGATGGATCCGGAGCA
TACGGGAGTGCTCTTGATGGAACTGTGCCTGCCTCGGTGCAGCAGTCAGGAGGAGCGAAGTCTGGCTCCAAGAATAAAGG
CGACGATGATTTTTCATACCAGGATATCTTAGATGCGCTACAGGATGGCAAAACATCAGTTGGCAAACGAATGAGTAACG
CATGACTTACATTTTTGCCTTCTCCTTGGGCCTGTCTGCTCTGAATAACAATTGTTTTGATGGGTATCTTATTTCATTAA
TCTACTTGGCAGGATGCCAAGATTGCTGTTTATTGTGTGCACATGGTGCACTGTAGGCTACAGAACCTTTTACTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52690.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis