Browse Element(s) Details


Os.11637.1.S1_at

Description gb:AK101835.1
DB_XREF= gi:32987044
TID=Os.11637.1
CNT=19
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11637 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033069C16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033069C16, full insert sequence.
FL= gb:AK101835.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3927011/11Indole-3-glycerol phosphate synthase, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g39250OsAffx.26388.1.S1_at11/114+23135334..23136788RNA recognition motif family protein, expressed
LOC_Os04g39260Os.52690.1.S1_at11/114+23137894..23142718CAF1 family ribonuclease containing protein, expressed
LOC_Os04g39270Os.11637.1.S1_at11/114+23143067..23146611Indole-3-glycerol phosphate synthase, chloroplast precursor, putative, expressed
LOC_Os04g39280Os.53718.1.A1_at11/114+23148145..23152629Telomere-binding protein alpha subunit, central domain containing protein, expressed
LOC_Os04g39290OsAffx.14198.1.S1_at11/114+23163163..23164041heavy metal-associated domain containing protein, expressed
LOC_Os04g39300OsAffx.26389.1.S1_at11/114+23169462..23173107heavy metal-associated domain containing protein, expressed
LOC_Os04g39300Os.50043.1.A1_at1/114+23169462..23173107heavy metal-associated domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000162biological_processtryptophan biosynthesis
GO:0009507cellular_componentchloroplast
GO:0004425molecular_functionindole-3-glycerol-phosphate synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11637.1.S1_at--730--7451Chr04:23144274..23144298 (25 bp)
GTGTCCAGCTCATCGGCATCAATAA
LOC_Os04g39270
Os.11637.1.S1_at--378--4011Chr04:23143808..23144272 (25 bp)
CGTAACCTCGAGACTTTTCAAGTTG
LOC_Os04g39270
Os.11637.1.S1_at--893--6751Chr04:23143592..23143616 (25 bp)
GTTCACACCAGACCATATTTCATTC
LOC_Os04g39270
Os.11637.1.S1_at--239--6171Chr04:23143411..23143435 (25 bp)
GAGGATCCTGGCAAAGCAATCGCTG
LOC_Os04g39270
Os.11637.1.S1_at--1055--3031Chr04:23143394..23143418 (25 bp)
AATCGCTGGGCTTTTCGGCAAAGAC
LOC_Os04g39270
Os.11637.1.S1_at--708--451Chr04:23143369..23143393 (25 bp)
ATCTCACCTGTGAGTGCTGCGTAAA
LOC_Os04g39270
Os.11637.1.S1_at--724--1811Chr04:23143223..23143247 (25 bp)
ACTAAACTCGATCAGTTCTTCCCAT
LOC_Os04g39270
Os.11637.1.S1_at--1097--3631Chr04:23143206..23143230 (25 bp)
CTTCCCATATACTCTTGTGACCAAA
LOC_Os04g39270
Os.11637.1.S1_at--474--8631Chr04:23143191..23143215 (25 bp)
TGTGACCAAACCTTTTCGACCAATA
LOC_Os04g39270
Os.11637.1.S1_at--621--6071Chr04:23143111..23143135 (25 bp)
GAGTACGAGTTCATATTTCCTTTGG
LOC_Os04g39270
Os.11637.1.S1_at--756--9471Chr04:23143069..23143093 (25 bp)
TCTGACACACGATTTCTTAAGGCTC
LOC_Os04g39270
Target Sequence 
GTGTCCAGCTCATCGGCATCAATAACCGTAACCTCGAGACTTTTCAAGTTGATATTTCAAACACTAAAAATCTTCTTGAG
GGTGAAAGAGGACAAACTATAGCTCAGAAAGGCATAATTGTTGTAGGGGAATCAGGGCTGTTCACACCAGACCATATTTC
ATTCGTTCAGAATGCTGGGGTTAAAGCTGTTCTCGTTGGGGAGTCTCTCATCAAGCAGGAGGATCCTGGCAAAGCAATCG
CTGGGCTTTTCGGCAAAGACATCTCACCTGTGAGTGCTGCGTAAAGTCTAAAGACAAACAGAGTGGCAGAGAGGCTGAGA
AATGATGGAGCACATCATCATATTGTACAGGGAGAGATGGAGCAATTAGCTTTTCTGGAGAGTTTTTGGTCAGCCATTTT
TTGTTTACTAAACTCGATCAGTTCTTCCCATATACTCTTGTGACCAAACCTTTTCGACCAATACAAATGGTTCACTGCAA
AGAAATATATGATCGAATAAGTTGGATTTAATTGCAAGGAGTACGAGTTCATATTTCCTTTGGAATATGGAACATCAAAA
TCTGACACACGATTTCTTAAGGCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11637.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis