Browse Element(s) Details


Os.22379.1.S1_at

Description gb:AK072142.1
DB_XREF= gi:32982165
TID=Os.22379.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.22379 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013128K07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013128K07, full insert sequence.
FL= gb:AK072142.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3924010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g39190OsAffx.4028.1.S1_at11/114+23086590..23092107cell division protein FtsH, putative, expressed
LOC_Os04g39190OsAffx.4028.1.S1_x_at11/114+23086590..23092107cell division protein FtsH, putative, expressed
LOC_Os04g39190Os.52019.1.A1_at11/114+23086590..23092107cell division protein FtsH, putative, expressed
LOC_Os04g39190Os.15870.1.S1_s_at10/114+23086590..23092107cell division protein FtsH, putative, expressed
LOC_Os04g39200OsAffx.26386.1.S1_at11/114+23092886..23093470hypothetical protein
LOC_Os04g39210Os.14189.1.S1_s_at11/114+23096161..23099742Agmatine deiminase, putative, expressed
LOC_Os04g39210OsAffx.26387.1.S1_at11/114+23096161..23099742Agmatine deiminase, putative, expressed
LOC_Os04g39220Os.19040.1.S1_at10/114+23099755..23107680expressed protein
LOC_Os04g39230Os.18755.1.S1_at11/114+23110763..23111945expressed protein
LOC_Os04g39240Os.22379.1.S1_at10/114+23112033..23117844expressed protein
LOC_Os04g39250OsAffx.26388.1.S1_at11/114+23135334..23136788RNA recognition motif family protein, expressed
LOC_Os04g39260Os.52690.1.S1_at11/114+23137894..23142718CAF1 family ribonuclease containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22379.1.S1_at--46--10171Chr04:23113334..23113358 (25 bp)
TATCAGGTCCACTAACACCATCAGG
LOC_Os04g39240
Os.22379.1.S1_at--180--8151Chr04:23113293..23113317 (25 bp)
GGAAACATTTCTCTTCGATCGGATA
LOC_Os04g39240
Os.22379.1.S1_at--969--2451Chr04:23113261..23113285 (25 bp)
AACAAGTACTCGGTCCTTCGCATTT
LOC_Os04g39240
Os.22379.1.S1_at--746--10631NONE
TTCGCATTTCCAGTGCTACAGACAG
NONE
Os.22379.1.S1_at--1124--7671Chr04:23112394..23112418 (25 bp)
GGGTTATAGAATCCTCTGCTGTAAA
LOC_Os04g39240
Os.22379.1.S1_at--761--7031Chr04:23112374..23112398 (25 bp)
GTAAATTCTGAATCTGCATGCTCCC
LOC_Os04g39240
Os.22379.1.S1_at--760--611Chr04:23112357..23112381 (25 bp)
ATGCTCCCGCATATCTTTTCTTTTT
LOC_Os04g39240
Os.22379.1.S1_at--978--10331Chr04:23112337..23112361 (25 bp)
TTTTTGAGATCAGCTCTTCGCGTCG
LOC_Os04g39240
Os.22379.1.S1_at--120--2971Chr04:23112170..23112194 (25 bp)
AATGGCTTGTCTGGATTCGGTAGTG
LOC_Os04g39240
Os.22379.1.S1_at--284--10011Chr04:23112090..23112114 (25 bp)
TAGCTGATGAGCATCCCTGGAGACT
LOC_Os04g39240
Os.22379.1.S1_at--130--5551Chr04:23112057..23112081 (25 bp)
GAAACTGGACTGTGTTACCCTGTTC
LOC_Os04g39240
Target Sequence 
TATCAGGTCCACTAACACCATCAGGTCATATACCTTATTCTGGAAACATTTCTCTTCGATCGGATAGCAGCACAACAAGT
ACTCGGTCCTTCGCATTTCCAGTGCTACAGACAGNAGTGGAACAGCAGCCCTGTGAAGATGGCGAAAGCGGACCGCAGGC
GCTTGAGACGGGACCGAGGTTGGGGTTATAGAATCCTCTGCTGTAAATTCTGAATCTGCATGCTCCCGCATATCTTTTCT
TTTTGAGATCAGCTCTTCGCGTCGCGCCCCTGAGCTCGTCGTGGTANCCGTGTTAAATTCATTCAAAATGTTGCTCATTT
CTCCCCTTTCCCCACCACCCCTCCTCTTGCTGCCCCCCTCCCTCCATGTCCTGCTCTCTCTTTTTTTTACTCATCTATAG
CAGGTTAATGGCTTGTCTGGATTCGGTAGTGGCTTGTAATTTGCATTGAGAGTGAGAAATGAAGGTATACTTGGTGAAAA
GTATTGTAGCTGATGAGCATCCCTGGAGACTGTAAAACTGAAACTGGACTGTGTTACCCTGTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22379.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis