Browse Element(s) Details


OsAffx.26387.1.S1_at

Description tigr:9632.m03711
TID=OsAffx.26387.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Porphyromonas-type peptidyl-arginine deiminase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3921011/11Agmatine deiminase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g39160Os.24653.1.A1_s_at11/114+23065706..23071398RNA dependent RNA polymerase family protein, expressed
LOC_Os04g39160Os.51949.1.S1_at11/114+23065706..23071398RNA dependent RNA polymerase family protein, expressed
LOC_Os04g39170Os.14783.2.S1_at11/114+23072254..23076090expressed protein
LOC_Os04g39170Os.14783.1.S1_at11/114+23072254..23076090expressed protein
LOC_Os04g39180OsAffx.26385.1.S1_at11/114+23074855..23078904Protein kinase domain containing protein, expressed
LOC_Os04g39190OsAffx.4028.1.S1_at11/114+23086590..23092107cell division protein FtsH, putative, expressed
LOC_Os04g39190OsAffx.4028.1.S1_x_at11/114+23086590..23092107cell division protein FtsH, putative, expressed
LOC_Os04g39190Os.52019.1.A1_at11/114+23086590..23092107cell division protein FtsH, putative, expressed
LOC_Os04g39190Os.15870.1.S1_s_at10/114+23086590..23092107cell division protein FtsH, putative, expressed
LOC_Os04g39200OsAffx.26386.1.S1_at11/114+23092886..23093470hypothetical protein
LOC_Os04g39210Os.14189.1.S1_s_at11/114+23096161..23099742Agmatine deiminase, putative, expressed
LOC_Os04g39210OsAffx.26387.1.S1_at11/114+23096161..23099742Agmatine deiminase, putative, expressed
LOC_Os04g39220Os.19040.1.S1_at10/114+23099755..23107680expressed protein
LOC_Os04g39230Os.18755.1.S1_at11/114+23110763..23111945expressed protein
LOC_Os04g39240Os.22379.1.S1_at10/114+23112033..23117844expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006596biological_processpolyamine biosynthesis
GO:0047632molecular_functionagmatine deiminase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26387.1.S1_at--128--2531Chr04:23098969..23098993 (25 bp)
AACTTCTACATAGCCAATGGCGGAA
LOC_Os04g39210
OsAffx.26387.1.S1_at--408--3651Chr04:23098971..23098995 (25 bp)
CTTCTACATAGCCAATGGCGGAATT
LOC_Os04g39210
OsAffx.26387.1.S1_at--825--891Chr04:23099258..23099282 (25 bp)
AGGCGCAAGAGAGATCGTGCTGGCA
LOC_Os04g39210
OsAffx.26387.1.S1_at--243--3071Chr04:23099563..23099587 (25 bp)
AATAAGGCCGCAGACAAACATTGTG
LOC_Os04g39210
OsAffx.26387.1.S1_at--868--9771Chr04:23099565..23099589 (25 bp)
TAAGGCCGCAGACAAACATTGTGAT
LOC_Os04g39210
OsAffx.26387.1.S1_at--752--891Chr04:23099567..23099591 (25 bp)
AGGCCGCAGACAAACATTGTGATTT
LOC_Os04g39210
OsAffx.26387.1.S1_at--671--4511Chr04:23099569..23099593 (25 bp)
GCCGCAGACAAACATTGTGATTTGT
LOC_Os04g39210
OsAffx.26387.1.S1_at--687--8431Chr04:23099682..23099706 (25 bp)
GGCCTTTGCCAACGTTGACCAGGCG
LOC_Os04g39210
OsAffx.26387.1.S1_at--412--3671Chr04:23099685..23099709 (25 bp)
CTTTGCCAACGTTGACCAGGCGAAT
LOC_Os04g39210
OsAffx.26387.1.S1_at--199--10291Chr04:23099686..23099710 (25 bp)
TTTGCCAACGTTGACCAGGCGAATG
LOC_Os04g39210
OsAffx.26387.1.S1_at--190--10691Chr04:23099687..23099711 (25 bp)
TTGCCAACGTTGACCAGGCGAATGG
LOC_Os04g39210
Target Sequence 
AACTTCTACATAGCCAATGGCGGAATTGTAGCACCAGCTTTTGGCGACAAGTGGGACGAAGAAGCGTGTGCTGTTCTTCA
GAAGGCATTTCCTGATCATGAGGTGGTGATGGTGGAAGGCGCAAGAGAGATCGTGCTGGCAGGGGGAAACATACACTGCA
TCACGCAGCAGCAGCCTGTACGCCCGTCGTAGATGATACTGCGTATATAGTATTATGAATTTGGACATGGGACTAGTCCA
GATTCGTAGTACTATATGTCCAGGGAGTAGATGGCACTATAGCAGCCATGCCCTATCGTGAATTCGTGATAAGCTACATC
ATTTGCTACCCAAAATGGCGACCCGATCATACACCATTGATTACCCAAAACCAAATGAATGAATTGATAGATTACCCAAA
ACCAAATGAATGAGTTGATAGAATAAGGCCGCAGACAAACATTGTGATTTGTGAGCTTGTGTGTAGGGGATGTGGTTGCA
CCAGCGTGATGGATATGGTTGTAAGTTGCAGTAGTGTAAGCACGTTGGAAACTGCCTTATGGCCTTTGCCAACGTTGACC
AGGCGAATGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26387.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis