Browse Element(s) Details


Os.24653.1.A1_s_at

Description gb:CA762311
DB_XREF= gi:25806350
DB_XREF=BR060002B20B11.ab1
CLONE=BR060002B20B11.ab1
TID=Os.24653.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.24653 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_192851.1 (A.thaliana) putative RNA-directed RNA polymerase (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3916011/11RNA dependent RNA polymerase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g39120OsAffx.4025.1.S1_at11/114+23050437..23051089copper amine oxidase, putative
LOC_Os04g39130OsAffx.4026.1.S1_at10/114+23053512..23056261expressed protein
LOC_Os04g39140Os.52258.1.S1_at11/114+23056413..23058360acetyltransferase, GNAT family protein, expressed
LOC_Os04g39150Os.12387.1.S1_at11/114+23059371..23060345Pathogenesis-related protein Bet v I family protein, expressed
LOC_Os04g39160Os.24653.1.A1_s_at11/114+23065706..23071398RNA dependent RNA polymerase family protein, expressed
LOC_Os04g39160Os.51949.1.S1_at11/114+23065706..23071398RNA dependent RNA polymerase family protein, expressed
LOC_Os04g39170Os.14783.2.S1_at11/114+23072254..23076090expressed protein
LOC_Os04g39170Os.14783.1.S1_at11/114+23072254..23076090expressed protein
LOC_Os04g39180OsAffx.26385.1.S1_at11/114+23074855..23078904Protein kinase domain containing protein, expressed
LOC_Os04g39190OsAffx.4028.1.S1_at11/114+23086590..23092107cell division protein FtsH, putative, expressed
LOC_Os04g39190OsAffx.4028.1.S1_x_at11/114+23086590..23092107cell division protein FtsH, putative, expressed
LOC_Os04g39190Os.52019.1.A1_at11/114+23086590..23092107cell division protein FtsH, putative, expressed
LOC_Os04g39190Os.15870.1.S1_s_at10/114+23086590..23092107cell division protein FtsH, putative, expressed
LOC_Os04g39200OsAffx.26386.1.S1_at11/114+23092886..23093470hypothetical protein
LOC_Os04g39210Os.14189.1.S1_s_at11/114+23096161..23099742Agmatine deiminase, putative, expressed
LOC_Os04g39210OsAffx.26387.1.S1_at11/114+23096161..23099742Agmatine deiminase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009615biological_processresponse to virus
GO:0009751biological_processresponse to salicylic acid stimulus
GO:0016246biological_processRNA interference
GO:0016441biological_processposttranscriptional gene silencing
GO:0016458biological_processgene silencing
GO:0030422biological_processRNA interference, production of siRNA
GO:0003676molecular_functionnucleic acid binding
GO:0003968molecular_functionRNA-directed RNA polymerase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24653.1.A1_s_at--472--6771Chr04:23069386..23069410 (25 bp)
GTTACACTCGAGGTAATGCCTGACT
LOC_Os04g39160
Os.24653.1.A1_s_at--793--591Chr04:23069401..23069425 (25 bp)
ATGCCTGACTAATTGTTCCTTTTCC
LOC_Os04g39160
Os.24653.1.A1_s_at--1029--10291Chr04:23069421..23069445 (25 bp)
TTTCCCCTTTTTGCTAGGCTGTTGT
LOC_Os04g39160
Os.24653.1.A1_s_at--555--911Chr04:23069436..23069460 (25 bp)
AGGCTGTTGTTTCTCATTTACTGAA
LOC_Os04g39160
Os.24653.1.A1_s_at--363--7111Chr04:23069508..23069532 (25 bp)
GTCACCAATTATGGACTGTAGCATT
LOC_Os04g39160
Os.24653.1.A1_s_at--1012--6551Chr04:23069546..23069570 (25 bp)
TGGGCCTGAGGCACCTTTTAAAAAT
LOC_Os04g39160
Os.24653.1.A1_s_at--879--2431Chr04:23069566..23069590 (25 bp)
AAAATGTATGCTTGCGGTTAAGGGC
LOC_Os04g39160
Os.24653.1.A1_s_at--824--9851Chr04:23069670..23069694 (25 bp)
TACAAGCTTGGAGTGAGTTTCTAAC
LOC_Os04g39160
Os.24653.1.A1_s_at--191--2031Chr04:23069698..23069722 (25 bp)
ACTAGTCAACTCACTCAGGATGGTT
LOC_Os04g39160
Os.24653.1.A1_s_at--492--5531Chr04:23069735..23069759 (25 bp)
GAAAAACTGGTGGTCATTGATCTAA
LOC_Os04g39160
Os.24653.1.A1_s_at--691--9031Chr04:23069820..23069844 (25 bp)
TGCACTGACCATACACATTTAACAA
LOC_Os04g39160
Target Sequence 
GTTACACTCGAGGTAATGCCTGACTAATTGTTCCTTTTCCCCTTTTTGCTAGGCTGTTGTTTCTCATTTACTGAAGGATT
TCTTTTTGTTCTTTACTAATTCAATCTTGATAGTTGCAAAATGTCACCAATTATGGACTGTAGCATTATAGTCATATATA
TGGGCCTGAGGCACCTTTTAAAAATGTATGCTTGCGGTTAAGGGCATGAATAAATGCATTAGGACAATATGTGCATATGT
TCCATGAAACATGTGATGCTAATAAGGTTATGCAAACCAGAAAGTACAAGCTTGGAGTGAGTTTCTAACTCAACTAGTCA
ACTCACTCAGGATGGTTTAACAATTAACAGAAAAACTGGTGGTCATTGATCTAAAAGTAATATATCTACGTGAACACCAA
TCATTGAAAAGTTTTGAATAATTTCAAACAAGTATGCACTGACCATACACATTTAACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24653.1.A1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis