Browse Element(s) Details


Os.51949.1.S1_at

Description gb:AK064379.1
DB_XREF= gi:32974397
TID=Os.51949.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51949 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-108-D10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-108-D10, full insert sequence.
FL= gb:AK064379.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3916011/11RNA dependent RNA polymerase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g39120OsAffx.4025.1.S1_at11/114+23050437..23051089copper amine oxidase, putative
LOC_Os04g39130OsAffx.4026.1.S1_at10/114+23053512..23056261expressed protein
LOC_Os04g39140Os.52258.1.S1_at11/114+23056413..23058360acetyltransferase, GNAT family protein, expressed
LOC_Os04g39150Os.12387.1.S1_at11/114+23059371..23060345Pathogenesis-related protein Bet v I family protein, expressed
LOC_Os04g39160Os.24653.1.A1_s_at11/114+23065706..23071398RNA dependent RNA polymerase family protein, expressed
LOC_Os04g39160Os.51949.1.S1_at11/114+23065706..23071398RNA dependent RNA polymerase family protein, expressed
LOC_Os04g39170Os.14783.2.S1_at11/114+23072254..23076090expressed protein
LOC_Os04g39170Os.14783.1.S1_at11/114+23072254..23076090expressed protein
LOC_Os04g39180OsAffx.26385.1.S1_at11/114+23074855..23078904Protein kinase domain containing protein, expressed
LOC_Os04g39190OsAffx.4028.1.S1_at11/114+23086590..23092107cell division protein FtsH, putative, expressed
LOC_Os04g39190OsAffx.4028.1.S1_x_at11/114+23086590..23092107cell division protein FtsH, putative, expressed
LOC_Os04g39190Os.52019.1.A1_at11/114+23086590..23092107cell division protein FtsH, putative, expressed
LOC_Os04g39190Os.15870.1.S1_s_at10/114+23086590..23092107cell division protein FtsH, putative, expressed
LOC_Os04g39200OsAffx.26386.1.S1_at11/114+23092886..23093470hypothetical protein
LOC_Os04g39210Os.14189.1.S1_s_at11/114+23096161..23099742Agmatine deiminase, putative, expressed
LOC_Os04g39210OsAffx.26387.1.S1_at11/114+23096161..23099742Agmatine deiminase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009615biological_processresponse to virus
GO:0009751biological_processresponse to salicylic acid stimulus
GO:0016246biological_processRNA interference
GO:0016441biological_processposttranscriptional gene silencing
GO:0016458biological_processgene silencing
GO:0030422biological_processRNA interference, production of siRNA
GO:0003676molecular_functionnucleic acid binding
GO:0003968molecular_functionRNA-directed RNA polymerase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51949.1.S1_at--171--9151Chr04:23070815..23070839 (25 bp)
TGCGACAACCTGCTGGCGATCAAGG
LOC_Os04g39160
Os.51949.1.S1_at--964--6451Chr04:23070832..23070856 (25 bp)
GATCAAGGCGTCGAGCCAGCTCAGG
LOC_Os04g39160
Os.51949.1.S1_at--410--1471Chr04:23070867..23070891 (25 bp)
AGAAGGACGATGACTCCACCGCGGT
LOC_Os04g39160
Os.51949.1.S1_at--75--6171Chr04:23070924..23070948 (25 bp)
GAGGATTCTCTGACTTTGAGTGACT
LOC_Os04g39160
Os.51949.1.S1_at--409--2231Chr04:23071006..23071030 (25 bp)
AAATTAGAGGTTCTCTGACGCGCCG
LOC_Os04g39160
Os.51949.1.S1_at--1101--8911Chr04:23071021..23071045 (25 bp)
TGACGCGCCGTCCTAAGTGAACTTT
LOC_Os04g39160
Os.51949.1.S1_at--710--2131Chr04:23071053..23071077 (25 bp)
ACAGTTCATTGCTGTGCGCCTGTGC
LOC_Os04g39160
Os.51949.1.S1_at--483--6991Chr04:23071080..23071104 (25 bp)
GTACGCTGTACAAATCTGGTTCGAC
LOC_Os04g39160
Os.51949.1.S1_at--478--1591Chr04:23071130..23071154 (25 bp)
AGCTCCGGCTCGCAACTTGGAAGAG
LOC_Os04g39160
Os.51949.1.S1_at--186--6091Chr04:23071211..23071235 (25 bp)
GAGTCTTAGTGCTGATCTACCGGTA
LOC_Os04g39160
Os.51949.1.S1_at--530--2891Chr04:23071235..23071259 (25 bp)
AAGGTGGAGGCTTCCATTTCTTGTT
LOC_Os04g39160
Target Sequence 
TGCGACAACCTGCTGGCGATCAAGGCGTCGAGCCAGCTCAGGCGGCGGCGGCAGAAGGACGATGACTCCACCGCGGTGGT
GCAGATGGACTGCAGCGCCTGATGTGGCAGAGGATTCTCTGACTTTGAGTGACTGACATGTGGGCCTGCTGGATAAGGGA
TCCATGGGTCAGTGACAAGTTAGAGGGAAATAAATTAGAGGTTCTCTGACGCGCCGTCCTAAGTGAACTTTCAACTGCAC
AGTTCATTGCTGTGCGCCTGTGCCTGTACGCTGTACAAATCTGGTTCGACTAATCTTAGCTGAGCTGAACAGCAGAGCTC
CGGCTCGCAACTTGGAAGAGGAAAGAGTTTGATGATGAACACCTACGTAGAGTAAAAGTTCCTCTTCCTAATAAAAGAGT
CTTAGTGCTGATCTACCGGTAAGGTGGAGGCTTCCATTTCTTGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51949.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis