Browse Element(s) Details


OsAffx.26385.1.S1_at

Description tigr:9632.m03707
TID=OsAffx.26385.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Protein kinase domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3918011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g39120OsAffx.4025.1.S1_at11/114+23050437..23051089copper amine oxidase, putative
LOC_Os04g39130OsAffx.4026.1.S1_at10/114+23053512..23056261expressed protein
LOC_Os04g39140Os.52258.1.S1_at11/114+23056413..23058360acetyltransferase, GNAT family protein, expressed
LOC_Os04g39150Os.12387.1.S1_at11/114+23059371..23060345Pathogenesis-related protein Bet v I family protein, expressed
LOC_Os04g39160Os.24653.1.A1_s_at11/114+23065706..23071398RNA dependent RNA polymerase family protein, expressed
LOC_Os04g39160Os.51949.1.S1_at11/114+23065706..23071398RNA dependent RNA polymerase family protein, expressed
LOC_Os04g39170Os.14783.2.S1_at11/114+23072254..23076090expressed protein
LOC_Os04g39170Os.14783.1.S1_at11/114+23072254..23076090expressed protein
LOC_Os04g39180OsAffx.26385.1.S1_at11/114+23074855..23078904Protein kinase domain containing protein, expressed
LOC_Os04g39190OsAffx.4028.1.S1_at11/114+23086590..23092107cell division protein FtsH, putative, expressed
LOC_Os04g39190OsAffx.4028.1.S1_x_at11/114+23086590..23092107cell division protein FtsH, putative, expressed
LOC_Os04g39190Os.52019.1.A1_at11/114+23086590..23092107cell division protein FtsH, putative, expressed
LOC_Os04g39190Os.15870.1.S1_s_at10/114+23086590..23092107cell division protein FtsH, putative, expressed
LOC_Os04g39200OsAffx.26386.1.S1_at11/114+23092886..23093470hypothetical protein
LOC_Os04g39210Os.14189.1.S1_s_at11/114+23096161..23099742Agmatine deiminase, putative, expressed
LOC_Os04g39210OsAffx.26387.1.S1_at11/114+23096161..23099742Agmatine deiminase, putative, expressed
LOC_Os04g39220Os.19040.1.S1_at10/114+23099755..23107680expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26385.1.S1_at--1030--6891Chr04:23075448..23075472 (25 bp)
GTATCACACGTAAGCTCCGAAGTTA
LOC_Os04g39180
OsAffx.26385.1.S1_at--167--6371Chr04:23075403..23075427 (25 bp)
GATCCAGAGTATCGCCACAATCACA
LOC_Os04g39180
OsAffx.26385.1.S1_at--4--10251Chr04:23075349..23075373 (25 bp)
TTTGGTATGGTGCTCCTACAACTCC
LOC_Os04g39180
OsAffx.26385.1.S1_at--162--2971Chr04:23075177..23075198 (22 bp)
AATGGCTTCCATGCTCATCAGAGAA
LOC_Os04g39180
OsAffx.26385.1.S1_at--1058--10771Chr04:23075094..23075118 (25 bp)
TTGATCTCAGTTTGAAGCTTGCCCT
LOC_Os04g39180
OsAffx.26385.1.S1_at--374--4551Chr04:23075074..23075098 (25 bp)
GCCCTTTCATGCACTGGACACAAGA
LOC_Os04g39180
OsAffx.26385.1.S1_at--634--5391Chr04:23075051..23075075 (25 bp)
GAAGCAGCGTCCGTCCATGGAGCAA
LOC_Os04g39180
OsAffx.26385.1.S1_at--300--5291Chr04:23075009..23075033 (25 bp)
GAAGGCCCTAAAGATCTCCATGAGA
LOC_Os04g39180
OsAffx.26385.1.S1_at--324--1551Chr04:23074966..23074990 (25 bp)
AGCATTAGCATCATCGAGTCCCATT
LOC_Os04g39180
OsAffx.26385.1.S1_at--120--6111Chr04:23074951..23074975 (25 bp)
GAGTCCCATTCATAGTACCCTGTGC
LOC_Os04g39180
OsAffx.26385.1.S1_at--364--3491Chr04:23074911..23074935 (25 bp)
CAGGCTGCAACTTAGTGTTTCCACT
LOC_Os04g39180
Target Sequence 
GTATCACACGTAAGCTCCGAAGTTAGAGGAACATTTGGATACGTCGATCCAGAGTATCGCCACAATCACAAGGTAAATGC
TGCAGGGGATGTCTACAGCTTTGGTATGGTGCTCCTACAACTCCTGTCAGGAAAACGAGCAATCAATATCATGAACACTG
CTAAACCAATGTCATTGGATCGAATGGCTTCCATGCTCATCAGAGAAGGCAACGTGTTGGAGTTTGCTGATCCTAGGCTG
AACGGAGAGTACTCGACAGAGGCATTTGATCTCAGTTTGAAGCTTGCCCTTTCATGCACTGGACACAAGAAGCAGCGTCC
GTCCATGGAGCAAGTTGTGTCACATCTTGAGAAGGCCCTAAAGATCTCCATGAGAGATGACGATAAGCATAACAGCATTA
GCATCATCGAGTCCCATTCATAGTACCCTGTGCAATCCTTCAGGAGTTCAGGCTGCAACTTAGTGTTTCCACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26385.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis