Browse Element(s) Details


Os.14783.2.S1_at

Description gb:AK107498.1
DB_XREF= gi:32992707
TID=Os.14783.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.14783 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-129-D10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-129-D10, full insert sequence.
FL= gb:AK107498.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3917011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g39120OsAffx.4025.1.S1_at11/114+23050437..23051089copper amine oxidase, putative
LOC_Os04g39130OsAffx.4026.1.S1_at10/114+23053512..23056261expressed protein
LOC_Os04g39140Os.52258.1.S1_at11/114+23056413..23058360acetyltransferase, GNAT family protein, expressed
LOC_Os04g39150Os.12387.1.S1_at11/114+23059371..23060345Pathogenesis-related protein Bet v I family protein, expressed
LOC_Os04g39160Os.24653.1.A1_s_at11/114+23065706..23071398RNA dependent RNA polymerase family protein, expressed
LOC_Os04g39160Os.51949.1.S1_at11/114+23065706..23071398RNA dependent RNA polymerase family protein, expressed
LOC_Os04g39170Os.14783.2.S1_at11/114+23072254..23076090expressed protein
LOC_Os04g39170Os.14783.1.S1_at11/114+23072254..23076090expressed protein
LOC_Os04g39180OsAffx.26385.1.S1_at11/114+23074855..23078904Protein kinase domain containing protein, expressed
LOC_Os04g39190OsAffx.4028.1.S1_at11/114+23086590..23092107cell division protein FtsH, putative, expressed
LOC_Os04g39190OsAffx.4028.1.S1_x_at11/114+23086590..23092107cell division protein FtsH, putative, expressed
LOC_Os04g39190Os.52019.1.A1_at11/114+23086590..23092107cell division protein FtsH, putative, expressed
LOC_Os04g39190Os.15870.1.S1_s_at10/114+23086590..23092107cell division protein FtsH, putative, expressed
LOC_Os04g39200OsAffx.26386.1.S1_at11/114+23092886..23093470hypothetical protein
LOC_Os04g39210Os.14189.1.S1_s_at11/114+23096161..23099742Agmatine deiminase, putative, expressed
LOC_Os04g39210OsAffx.26387.1.S1_at11/114+23096161..23099742Agmatine deiminase, putative, expressed
LOC_Os04g39220Os.19040.1.S1_at10/114+23099755..23107680expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14783.2.S1_at--743--4191Chr04:23075386..23075410 (25 bp)
CCCTGCAGCATTTACCTTGTGATTG
LOC_Os04g39170
Os.14783.2.S1_at--231--6391Chr04:23075424..23075448 (25 bp)
GATCGACGTATCCAAATGTTCCTCT
LOC_Os04g39170
Os.14783.2.S1_at--791--731Chr04:23075439..23075463 (25 bp)
ATGTTCCTCTAACTTCGGAGCTTAC
LOC_Os04g39170
Os.14783.2.S1_at--110--1551Chr04:23075457..23075481 (25 bp)
AGCTTACGTGTGATACTCCTATGTC
LOC_Os04g39170
Os.14783.2.S1_at--929--651Chr04:23075615..23075639 (25 bp)
ATGCAACCAACCTTGACATCACGGT
LOC_Os04g39170
Os.14783.2.S1_at--605--5071Chr04:23075706..23075730 (25 bp)
GCAGCCTCTGAATCCATGACAGGTT
LOC_Os04g39170
Os.14783.2.S1_at--422--4551Chr04:23075884..23075908 (25 bp)
GCCCATCGCAATAACCTCTTAGTGA
LOC_Os04g39170
Os.14783.2.S1_at--67--5971Chr04:23075934..23075958 (25 bp)
GAGAGGCTTGTAACTTCCCTTAGGA
LOC_Os04g39170
Os.14783.2.S1_at--376--2331Chr04:23075958..23075982 (25 bp)
AAAGTTTCTGCATGCTCGTTCTTAA
LOC_Os04g39170
Os.14783.2.S1_at--262--1691Chr04:23076007..23076031 (25 bp)
AGCCATTTGCAAGCACTCCTTTGTA
LOC_Os04g39170
Os.14783.2.S1_at--790--6471Chr04:23076063..23076087 (25 bp)
GATACATCCAACTTTCAGGGCAAGA
LOC_Os04g39170
Target Sequence 
CCCTGCAGCATTTACCTTGTGATTGTGGCGATACTCTGGATCGACGTATCCAAATGTTCCTCTAACTTCGGAGCTTACGT
GTGATACTCCTATGTCAATGACTCTTGACAGTCCAAAATCCGACAATTTGGGTTCCATATCAACCCCAAGAAGTATATTG
GTTGGCTGTAACGGCACAAATGAGTTTGACATTGCTTAAATTTGCAGATGTACTAGAGTTTTCCAAATCATGCAACCAAC
CTTGACATCACGGTGAACAATGCAGCCTTCAGGATATATGTGAAGGAACCAAAGGCCACAGGCGCTGCCAAGTGCAATCT
GCAGCCTCTGAATCCATGACAGGTTACCGTTGATACATAACTCATATACAAGAAAACATTCCTCCTGCCCATCGCAATAA
CCTCTTAGTGACACAAGGTTTGGATGTCTCACATGTGAGAGGCTTGTAACTTCCCTTAGGAAAGTTTCTGCATGCTCGTT
CTTAACGATGTGCTTTACAGCAACAGGCCAGCCATTTGCAAGCACTCCTTTGTACACTTTCCCTGAAAAATCACATAATA
AAGAAGATACATCCAACTTTCAGGGCAAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14783.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis