Browse Element(s) Details


Os.12387.1.S1_at

Description gb:AK119676.1
DB_XREF= gi:37989299
TID=Os.12387.1
CNT=71
FEA=FLmRNA
TIER=FL+Stack
STK=31
UG=Os.12387 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-024-E05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-156-G11, full insert sequence.
FL= gb:AK059231.1 gb:AK119676.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3915011/11Pathogenesis-related protein Bet v I family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g39120OsAffx.4025.1.S1_at11/114+23050437..23051089copper amine oxidase, putative
LOC_Os04g39130OsAffx.4026.1.S1_at10/114+23053512..23056261expressed protein
LOC_Os04g39140Os.52258.1.S1_at11/114+23056413..23058360acetyltransferase, GNAT family protein, expressed
LOC_Os04g39150Os.12387.1.S1_at11/114+23059371..23060345Pathogenesis-related protein Bet v I family protein, expressed
LOC_Os04g39160Os.24653.1.A1_s_at11/114+23065706..23071398RNA dependent RNA polymerase family protein, expressed
LOC_Os04g39160Os.51949.1.S1_at11/114+23065706..23071398RNA dependent RNA polymerase family protein, expressed
LOC_Os04g39170Os.14783.2.S1_at11/114+23072254..23076090expressed protein
LOC_Os04g39170Os.14783.1.S1_at11/114+23072254..23076090expressed protein
LOC_Os04g39180OsAffx.26385.1.S1_at11/114+23074855..23078904Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12387.1.S1_at--933--5891Chr04:23059868..23059892 (25 bp)
GAGCTGGTCAGCTTCTACAAGAACT
LOC_Os04g39150
Os.12387.1.S1_at--1138--1411Chr04:23059887..23059911 (25 bp)
AGAACTTCAGGGTGACGCTGCAGGT
LOC_Os04g39150
Os.12387.1.S1_at--863--8891Chr04:23059959..23059983 (25 bp)
TGAGCTGGACCATGGACTTCGACAA
LOC_Os04g39150
Os.12387.1.S1_at--209--2031Chr04:23060055..23060079 (25 bp)
ACTACCTCCTCAAGAACTAGCCAGA
LOC_Os04g39150
Os.12387.1.S1_at--920--5472Chr10:15152411..15152536 (24 bp)
GAACTAGCCAGACAGCCAGATCGAG
NONE
Os.12387.1.S1_at--324--7291Chr04:23060106..23060130 (25 bp)
GTGCGTGGCTTATGTGTTAGAGTCC
LOC_Os04g39150
Os.12387.1.S1_at--51--6791Chr04:23060121..23060145 (25 bp)
GTTAGAGTCCACTATAGCGTCCTCG
LOC_Os04g39150
Os.12387.1.S1_at--806--9411Chr04:23060156..23060180 (25 bp)
TCGTCGCACACGGTCGCAGTATCGG
LOC_Os04g39150
Os.12387.1.S1_at--934--7711Chr04:23060180..23060204 (25 bp)
GGGTGTTGCATTTGCTAGCTCTCCG
LOC_Os04g39150
Os.12387.1.S1_at--993--1871Chr04:23060212..23060236 (25 bp)
ACTGTCTCCCACGAATTAGTGTACG
LOC_Os04g39150
Os.12387.1.S1_at--756--151Chr04:23060226..23060250 (25 bp)
ATTAGTGTACGTATCGGTGCATGAG
LOC_Os04g39150
Target Sequence 
GAGCTGGTCAGCTTCTACAAGAACTTCAGGGTGACGCTGCAGGTGACCCCCAAGGGCGGNCGCCGCCGCCCCCNGCCNGC
CGACGGCGCGGTGGTGAGCTGGACCATGGACTTCGACAAGGCCAGCGAGGAGGTGCCCGACCCGGACGTCATCAAGGAGA
CCGCCGCCAAGACCTTCCACGACCTCGACGACTACCTCCTCAAGAACTAGCCAGACAGCCAGATCGAGCGCCGCCGTGCG
GGTGCGTGGCTTATGTGTTAGAGTCCACTATAGCGTCCTCGCCGTCAGTCGTCGTCGCACACGGTCGCAGTATCGGGGTG
TTGCATTTGCTAGCTCTCCGGCTAGCCACTGTCTCCCACGAATTAGTGTACGTATCGGTGCATGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12387.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis