Browse Element(s) Details


OsAffx.4026.1.S1_at

Description tigr:9632.m03701
TID=OsAffx.4026.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3913010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g39120OsAffx.4025.1.S1_at11/114+23050437..23051089copper amine oxidase, putative
LOC_Os04g39130OsAffx.4026.1.S1_at10/114+23053512..23056261expressed protein
LOC_Os04g39140Os.52258.1.S1_at11/114+23056413..23058360acetyltransferase, GNAT family protein, expressed
LOC_Os04g39150Os.12387.1.S1_at11/114+23059371..23060345Pathogenesis-related protein Bet v I family protein, expressed
LOC_Os04g39160Os.24653.1.A1_s_at11/114+23065706..23071398RNA dependent RNA polymerase family protein, expressed
LOC_Os04g39160Os.51949.1.S1_at11/114+23065706..23071398RNA dependent RNA polymerase family protein, expressed
LOC_Os04g39170Os.14783.2.S1_at11/114+23072254..23076090expressed protein
LOC_Os04g39170Os.14783.1.S1_at11/114+23072254..23076090expressed protein
LOC_Os04g39180OsAffx.26385.1.S1_at11/114+23074855..23078904Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4026.1.S1_at--81--3251Chr04:23053570..23053594 (25 bp)
CAAGCGATGTATTTCCCTGCGGAAG
LOC_Os04g39130
OsAffx.4026.1.S1_at--1108--2171Chr04:23053599..23053623 (25 bp)
ACACTAGGAATGATGCTGCTCTCAG
LOC_Os04g39130
OsAffx.4026.1.S1_at--198--1131Chr04:23053622..23053646 (25 bp)
AGTGCTACTTGTGCTTGTTCTCTCA
LOC_Os04g39130
OsAffx.4026.1.S1_at--1076--10791Chr04:23053636..23053660 (25 bp)
TTGTTCTCTCAGCATATTCTCCTGA
LOC_Os04g39130
OsAffx.4026.1.S1_at--939--8431NONE
GGCCATCAACAGTCCTCATGACAAT
NONE
OsAffx.4026.1.S1_at--977--5131Chr04:23054376..23054400 (25 bp)
GCAAAAGCCTGCAATCTGTTCAATG
LOC_Os04g39130
OsAffx.4026.1.S1_at--682--10791Chr04:23054419..23054443 (25 bp)
TTGGAGGCCCGATTTACACTAACAC
LOC_Os04g39130
OsAffx.4026.1.S1_at--984--2191Chr04:23054442..23054466 (25 bp)
ACAACATGCCCAACGATACCAGAGG
LOC_Os04g39130
OsAffx.4026.1.S1_at--43--5451Chr04:23054550..23054574 (25 bp)
GAACCCCATCTATTCTTGACTATTG
LOC_Os04g39130
OsAffx.4026.1.S1_at--1132--7651Chr04:23054602..23054626 (25 bp)
GGGATTCGATTGCACGGAACCAGAT
LOC_Os04g39130
OsAffx.4026.1.S1_at--437--5251Chr04:23054628..23054652 (25 bp)
GAATCATTGCTCTGTTTACTGTCTC
LOC_Os04g39130
Target Sequence 
CAAGCGATGTATTTCCCTGCGGAAGAAAAACACTAGGAATGATGCTGCTCTCAGTGCTACTTGTGCTTGTTCTCTCAGCA
TATTCTCCTGAGCAGATTTTCCTTTACCCTCCAATGCCAGCACACAACTCTCATCAGACGGCCATCAACAGTCCTCATGA
CAATGCAAAAGCCTGCAATCTGTTCAATGGAACATGGGTTAGGGATTTTGGAGGCCCGATTTACACTAACACAACATGCC
CAACGATACCAGAGGCAAGGAACTGTGCAAAGTACGGAAAGCAAATGGATTATGTAAACTGGATGTGGAAACCGCATGGT
TGTGCCATGGAAAAATTCGAACCCCATCTATTCTTGACTATTGTCAGAGGGAAGACATTGGCTTTTGCTGGGGATTCGAT
TGCACGGAACCAGATGGAATCATTGCTCTGTTTACTGTCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4026.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis