Browse Element(s) Details


OsAffx.4028.1.S1_x_at

Description tigr:9632.m03709
TID=OsAffx.4028.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to At3g02450
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3919011/11cell division protein FtsH, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g39160Os.24653.1.A1_s_at11/114+23065706..23071398RNA dependent RNA polymerase family protein, expressed
LOC_Os04g39160Os.51949.1.S1_at11/114+23065706..23071398RNA dependent RNA polymerase family protein, expressed
LOC_Os04g39170Os.14783.2.S1_at11/114+23072254..23076090expressed protein
LOC_Os04g39170Os.14783.1.S1_at11/114+23072254..23076090expressed protein
LOC_Os04g39180OsAffx.26385.1.S1_at11/114+23074855..23078904Protein kinase domain containing protein, expressed
LOC_Os04g39190OsAffx.4028.1.S1_at11/114+23086590..23092107cell division protein FtsH, putative, expressed
LOC_Os04g39190OsAffx.4028.1.S1_x_at11/114+23086590..23092107cell division protein FtsH, putative, expressed
LOC_Os04g39190Os.52019.1.A1_at11/114+23086590..23092107cell division protein FtsH, putative, expressed
LOC_Os04g39190Os.15870.1.S1_s_at10/114+23086590..23092107cell division protein FtsH, putative, expressed
LOC_Os04g39200OsAffx.26386.1.S1_at11/114+23092886..23093470hypothetical protein
LOC_Os04g39210Os.14189.1.S1_s_at11/114+23096161..23099742Agmatine deiminase, putative, expressed
LOC_Os04g39210OsAffx.26387.1.S1_at11/114+23096161..23099742Agmatine deiminase, putative, expressed
LOC_Os04g39220Os.19040.1.S1_at10/114+23099755..23107680expressed protein
LOC_Os04g39230Os.18755.1.S1_at11/114+23110763..23111945expressed protein
LOC_Os04g39240Os.22379.1.S1_at10/114+23112033..23117844expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006510biological_processATP-dependent proteolysis
GO:0010027biological_processthylakoid membrane organization and biogenesis
GO:0010205biological_processphotoinhibition
GO:0009507cellular_componentchloroplast
GO:0009535cellular_componentthylakoid membrane (sensu Viridiplantae)
GO:0004176molecular_functionATP-dependent peptidase activity
GO:0008233molecular_functionpeptidase activity
GO:0008237molecular_functionmetallopeptidase activity
GO:0008270molecular_functionzinc ion binding
GO:0016887molecular_functionATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4028.1.S1_x_at--280--5411Chr04:23090068..23090092 (25 bp)
GAAGCTGCCCCATCTATAATTTTCA
LOC_Os04g39190
OsAffx.4028.1.S1_x_at--540--7631Chr04:23089994..23090013 (20 bp)
GGGACCAAACTTTAAACCAGCTGCT
LOC_Os04g39190
OsAffx.4028.1.S1_x_at--1107--7991Chr04:23089869..23089893 (25 bp)
GGATGGTTTTGACTCGGACATGAAA
LOC_Os04g39190
OsAffx.4028.1.S1_x_at--433--2831Chr04:23089846..23089870 (25 bp)
AAGTTATTGTCATGGCTGCTACTAA
LOC_Os04g39190
OsAffx.4028.1.S1_x_at--447--3091Chr04:23089823..23089847 (25 bp)
AATAGGCCTAAAGCACTGGACCCTG
LOC_Os04g39190
OsAffx.4028.1.S1_x_at--375--9331Chr04:23089791..23089815 (25 bp)
TCGCCCTGGTCGGTTCTCAAGAAAA
LOC_Os04g39190
OsAffx.4028.1.S1_x_at--1021--2431Chr04:23089770..23089794 (25 bp)
AAAAGTTTTGGTTGGTGTGCCTGAT
LOC_Os04g39190
OsAffx.4028.1.S1_x_at--778--8331Chr04:23089722..23089746 (25 bp)
GGCTGTTCATTTAAGGGACGTTCCT
LOC_Os04g39190
OsAffx.4028.1.S1_x_at--691--6211Chr04:23089610..23089634 (25 bp)
GAGGCTGCGTTACTAGCTGCTCGAA
LOC_Os04g39190
OsAffx.4028.1.S1_x_at--992--3171Chr04:23089255..23089279 (25 bp)
CAATACTGTGGCTCGGGAGGATATT
LOC_Os04g39190
OsAffx.4028.1.S1_x_at--470--891Chr04:23089162..23089186 (25 bp)
AGGCCTCACTAAATTGTTTCCATGG
LOC_Os04g39190
Target Sequence 
GAAGCTGCCCCATCTATAATTTTCATTGATGAACTTGATGCTGTGGGTGGAAGTCGAGGTAGAAGTTTTAATGATGAGAG
GGACCAAACTTTAAACCAGCTGCTTACTGAGATGGATGGTTTTGACTCGGACATGAAAGTTATTGTCATGGCTGCTACTA
ATAGGCCTAAAGCACTGGACCCTGCTCTGTGTCGCCCTGGTCGGTTCTCAAGAAAAGTTTTGGTTGGTGTGCCTGATTTG
GAGGGGCGAAGGAATATTTTGGCTGTTCATTTAAGGGACGTTCCTTTGGAAGAGGATCCTGAAATAATTTGTGATCTGGT
TGCTAGTTTAACACCAGGATTGGTTGGTGCGGATCTAGCAAACATTGTGAATGAGGCTGCGTTACTAGCTGCTCGAAGGG
GTGGCAATACTGTGGCTCGGGAGGATATTATGGATGCAATTGAGAGGGAGAAATATGGGGTCAATGGTAGACAAGAGAAT
GCTGATTCTGAAAGGCAAGGCCTCACTAAATTGTTTCCATGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4028.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis