Browse Element(s) Details


Os.19040.1.S1_at

Description gb:AK119336.1
DB_XREF= gi:37988959
TID=Os.19040.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.19040 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-131-C07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-131-C07, full insert sequence.
FL= gb:AK119336.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3922010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g39170Os.14783.2.S1_at11/114+23072254..23076090expressed protein
LOC_Os04g39170Os.14783.1.S1_at11/114+23072254..23076090expressed protein
LOC_Os04g39180OsAffx.26385.1.S1_at11/114+23074855..23078904Protein kinase domain containing protein, expressed
LOC_Os04g39190OsAffx.4028.1.S1_at11/114+23086590..23092107cell division protein FtsH, putative, expressed
LOC_Os04g39190OsAffx.4028.1.S1_x_at11/114+23086590..23092107cell division protein FtsH, putative, expressed
LOC_Os04g39190Os.52019.1.A1_at11/114+23086590..23092107cell division protein FtsH, putative, expressed
LOC_Os04g39190Os.15870.1.S1_s_at10/114+23086590..23092107cell division protein FtsH, putative, expressed
LOC_Os04g39200OsAffx.26386.1.S1_at11/114+23092886..23093470hypothetical protein
LOC_Os04g39210Os.14189.1.S1_s_at11/114+23096161..23099742Agmatine deiminase, putative, expressed
LOC_Os04g39210OsAffx.26387.1.S1_at11/114+23096161..23099742Agmatine deiminase, putative, expressed
LOC_Os04g39220Os.19040.1.S1_at10/114+23099755..23107680expressed protein
LOC_Os04g39230Os.18755.1.S1_at11/114+23110763..23111945expressed protein
LOC_Os04g39240Os.22379.1.S1_at10/114+23112033..23117844expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19040.1.S1_at--631--331Chr04:23100587..23100921 (25 bp)
ATACAAGGCATCTCATGGATTCTAA
LOC_Os04g39220
Os.19040.1.S1_at--887--7651Chr04:23100456..23100480 (25 bp)
GGGTTTTCAAGCACCACGTAAATAG
LOC_Os04g39220
Os.19040.1.S1_at--1157--5531Chr04:23100307..23100331 (25 bp)
GAAACCTTACTCTGCACGGGATGAA
LOC_Os04g39220
Os.19040.1.S1_at--658--2911Chr04:23100224..23100248 (25 bp)
AAGGATATGTGCCATCCGACCTGCG
LOC_Os04g39220
Os.19040.1.S1_at--634--5831Chr04:23100207..23100231 (25 bp)
GACCTGCGTCAGACTCCAGTATACA
LOC_Os04g39220
Os.19040.1.S1_at--983--1191Chr04:23100190..23100214 (25 bp)
AGTATACACCTCTGCTGTTCAGCTG
LOC_Os04g39220
Os.19040.1.S1_at--1145--4731Chr04:23100177..23100201 (25 bp)
GCTGTTCAGCTGTTACCAACACTTT
LOC_Os04g39220
Os.19040.1.S1_at--702--7791Chr04:23099940..23099964 (25 bp)
GGTCCACTGGTCCATGTATCATTGT
LOC_Os04g39220
Os.19040.1.S1_at--335--431Chr04:23099923..23099947 (25 bp)
ATCATTGTGGTACAGCGCTTGGTTT
LOC_Os04g39220
Os.19040.1.S1_at--140--2111Chr04:23099823..23099847 (25 bp)
ACATGTCCATGTAAGAATCCCGATG
LOC_Os04g39220
Os.19040.1.S1_at--147--771Chr04:23099755..23099779 (25 bp)
ATGTCATTGTTTCCACTTCCTGCAT
NONE
Target Sequence 
ATACAAGGCATCTCATGGATTCTAATGTTCTTGATGTAACATATGAGGACAAGCAGAAGTTAAGATTTGCATTTGAGCAA
CTAAAGACGAAAGCATTGCAGTTGAACTGCTGGGACAGAAGTGAGCTGGAAGGGTTTTCAAGCACCACGTAAATAGTACC
AAATACTAATGGTACTGCCGTAATGTGAAACCTTACTCTGCACGGGATGAAAATTTTGACGAACTGAAGGTGAAGATGGA
GAGTGGACATGGTGACTGGTGAGGGGCAGAAGGATATGTGCCATCCGACCTGCGTCAGACTCCAGTATACACCTCTGCTG
TTCAGCTGTTACCAACACTTTACGAAGGTGGCCGGAAAATGCATTGTTCACATGTTGGGAACGAGGTGGTCCACTGGTCC
ATGTATCATTGTGGTACAGCGCTTGGTTTTGATGCAACAGAATTGCAGTTTAGACTNCTCAATAGACCATAGGTTATTTC
ACCGAAAGGTTTACNTTTCAACCTACATGTCCATGTAAGAATCCCGATGTAAATGTAGAAATTTTGTTTTGGAAGTTCAT
TTCGGGNNNCTCATGTCATTGTTTCCACTTCCTGCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19040.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis