Browse Element(s) Details


Os.18755.1.S1_at

Description gb:AK073154.1
DB_XREF= gi:32983177
TID=Os.18755.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18755 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033011D19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033011D19, full insert sequence.
FL= gb:AK073154.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3923011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g39190OsAffx.4028.1.S1_at11/114+23086590..23092107cell division protein FtsH, putative, expressed
LOC_Os04g39190OsAffx.4028.1.S1_x_at11/114+23086590..23092107cell division protein FtsH, putative, expressed
LOC_Os04g39190Os.52019.1.A1_at11/114+23086590..23092107cell division protein FtsH, putative, expressed
LOC_Os04g39190Os.15870.1.S1_s_at10/114+23086590..23092107cell division protein FtsH, putative, expressed
LOC_Os04g39200OsAffx.26386.1.S1_at11/114+23092886..23093470hypothetical protein
LOC_Os04g39210Os.14189.1.S1_s_at11/114+23096161..23099742Agmatine deiminase, putative, expressed
LOC_Os04g39210OsAffx.26387.1.S1_at11/114+23096161..23099742Agmatine deiminase, putative, expressed
LOC_Os04g39220Os.19040.1.S1_at10/114+23099755..23107680expressed protein
LOC_Os04g39230Os.18755.1.S1_at11/114+23110763..23111945expressed protein
LOC_Os04g39240Os.22379.1.S1_at10/114+23112033..23117844expressed protein
LOC_Os04g39250OsAffx.26388.1.S1_at11/114+23135334..23136788RNA recognition motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18755.1.S1_at--315--8451Chr04:23111346..23111370 (25 bp)
GGCCAGCTAGCTCCGGTGCAAGTAA
LOC_Os04g39230
Os.18755.1.S1_at--1044--1871Chr04:23111463..23111487 (25 bp)
ACGAGGTCGCCAGGATGCACGAGAT
LOC_Os04g39230
Os.18755.1.S1_at--981--1291Chr04:23111484..23111508 (25 bp)
AGATGCTGAAGAGGGACTACGCGTC
LOC_Os04g39230
Os.18755.1.S1_at--111--971Chr04:23111562..23111586 (25 bp)
AGGACCTGCCCTAACTAAGCTTCAG
LOC_Os04g39230
Os.18755.1.S1_at--177--4911Chr04:23111580..23111604 (25 bp)
GCTTCAGCTGCATATTCGTAGTGTA
LOC_Os04g39230
Os.18755.1.S1_at--1124--291Chr04:23111623..23111647 (25 bp)
ATAGCTCCTCTGAAAGATCTGAACT
LOC_Os04g39230
Os.18755.1.S1_at--409--6411Chr04:23111638..23111662 (25 bp)
GATCTGAACTGACACACATAGGTAG
LOC_Os04g39230
Os.18755.1.S1_at--1019--9891Chr04:23111726..23111750 (25 bp)
TACTCCTATGGAATAACAGCCTTTG
LOC_Os04g39230
Os.18755.1.S1_at--1130--2151Chr04:23111741..23111765 (25 bp)
ACAGCCTTTGGTTTAGTATAGCATC
LOC_Os04g39230
Os.18755.1.S1_at--386--3871Chr04:23111843..23111867 (25 bp)
CTGATGATGCTCATGCTTGGTGCTA
LOC_Os04g39230
Os.18755.1.S1_at--388--4351Chr04:23111915..23111939 (25 bp)
CCAGTGTGTCAGGTTTGCAGTTTTA
LOC_Os04g39230
Target Sequence 
GGCCAGCTAGCTCCGGTGCAAGTAACCGCGGCGGCGGCGGGCGNCGGCGGCGAGCGGCGGCAAGCAGCAGGAGTACGGTG
GAGATGCGCGCGTCGGCNTGGGCGAAGCACCACCGCGACGAGGTCGCCAGGATGCACGAGATGCTGAAGAGGGACTACGC
GTCCAAGGCGCGCCGCCGCTCGCCGATCAACAACGGCGAGCCGTCGCTGGAGGAGGAGGACCTGCCCTAACTAAGCTTCA
GCTGCATATTCGTAGTGTAGTGTAGCGTAGCTTAGCTATAGCTCCTCTGAAAGATCTGAACTGACACACATAGGTAGTAC
ATACAGTTATTACTAGAGCTGCTCTTTTAGTTAGCAAATTAGCAGGCAGGATAGTGTAGTTACTCCTATGGAATAACAGC
CTTTGGTTTAGTATAGCATCCAAGCTGGGNNGTCATTTGTTAGCCCTGAGAGTCAGAGAGCCATGAACAAACAGTCTGAA
ACTGGGCAGTTTTGTCCCTGATGATGCTCATGCTTGGTGCTANNTAAAGCTTTTAGCTANNTTCACCCTGTAACATACAT
AAATGTGCACCAGTGTGTCAGGTTTGCAGTTTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18755.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis