Browse Element(s) Details


OsAffx.14199.1.S1_at

Description tigr:9632.m03725
TID=OsAffx.14199.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3933010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g39300OsAffx.26389.1.S1_at11/114+23169462..23173107heavy metal-associated domain containing protein, expressed
LOC_Os04g39300Os.50043.1.A1_at1/114+23169462..23173107heavy metal-associated domain containing protein, expressed
LOC_Os04g39310OsAffx.16205.1.S1_at1/114+23185581..23187098hypothetical protein
LOC_Os04g39310OsAffx.25292.1.S1_at1/114+23185581..23187098hypothetical protein
LOC_Os04g39320Os.11920.1.S1_s_at11/114+23189324..23191149expressed protein
LOC_Os04g39320Os.35433.1.S1_at11/114+23189324..23191149expressed protein
LOC_Os04g39330OsAffx.14199.1.S1_at10/114+23193937..23195374hypothetical protein
LOC_Os04g39340NANA4+23197922..23198374hypothetical protein
LOC_Os04g39350Os.12082.1.S1_at11/114+23203407..23204235heavy metal-associated domain containing protein, expressed
LOC_Os04g39360OsAffx.14201.1.S1_at11/114+23208927..23209592heavy metal-associated domain containing protein, expressed
LOC_Os04g39370OsAffx.4029.1.S1_at9/114+23211046..23212874heavy metal-associated domain containing protein
LOC_Os04g39370OsAffx.17908.1.S1_x_at1/114+23211046..23212874heavy metal-associated domain containing protein
LOC_Os04g39380OsAffx.14202.1.S1_at11/114+23216654..23217200expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14199.1.S1_at--817--7431Chr04:23193967..23193991 (25 bp)
GTGTTTGGACGCGACACCATCTTCC
LOC_Os04g39330
OsAffx.14199.1.S1_at--889--5631Chr04:23193979..23194003 (25 bp)
GACACCATCTTCCTTGCCGGGTTTT
LOC_Os04g39330
OsAffx.14199.1.S1_at--324--7591NONE
GGTTTTCCGTCTTGAGTAAGCAAAT
NONE
OsAffx.14199.1.S1_at--261--6071Chr04:23194887..23194906 (20 bp)
GAGTAAGCAAATCACCTTCCTAGGT
LOC_Os04g39330
OsAffx.14199.1.S1_at--965--9651Chr04:23194893..23194917 (25 bp)
TCACCTTCCTAGGTGGTTTTGCTGG
LOC_Os04g39330
OsAffx.14199.1.S1_at--161--10391Chr04:23194909..23194933 (25 bp)
TTTTGCTGGCAGTTTCGTCCGACGT
LOC_Os04g39330
OsAffx.14199.1.S1_at--769--10531Chr04:23194922..23194946 (25 bp)
TTCGTCCGACGTGGTGTTGTTGACC
LOC_Os04g39330
OsAffx.14199.1.S1_at--350--3572Chr04:23194931..23194955 (25 bp)
CGTGGTGTTGTTGACCCGGTTGACA
LOC_Os04g39330
OsAffx.14199.1.S1_at--299--88111Chr11:407095..407119 (25 bp)
TGTTGACCCGGTTGACAAGCTGACT
NONE
OsAffx.14199.1.S1_at--286--1819Chr11:407100..407124 (25 bp)
ACCCGGTTGACAAGCTGACTCAGCG
NONE
OsAffx.14199.1.S1_at--217--4331Chr04:23195285..23195309 (25 bp)
CCATCGAGGTACAGGCAGGTCGGAA
LOC_Os04g39330
Target Sequence 
GTGTTTGGACGCGACACCATCTTCCTTGCCGGGTTTTCCGTCTTGAGTAAGCAAATCACCTTCCTAGGTGGTTTTGCTGG
CAGTTTCGTCCGACGTGGTGTTGTTGACCCGGTTGACAAGCTGACTCAGCGTGGTGGGACCCACATGTCACCCTCCTCCG
CCAACGCCGACACCCTCGTCTCCGCGTGCCCACAACTCGTCGGCCACCTCGTCCGTCTCGACCGCCTCCACTTTGCCCGC
CCGGTGCCCCGCGCCGTCGGGATCCGCCCCGTCCCATCCTCCCACAGTGTCTCCTTCGTCGGCGACCCGGAGCCGCTCAT
CGCCCGCCCCACCGCGAAATGCGTGGTGCCCAGCCTTGTTGCGGCCAAGGAGGAGAATCGCCGCACGGCGAAGGAGCCGG
CGATTATCGTGCCATCGAGGTACAGGCAGGTCGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14199.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis