Browse Element(s) Details


OsAffx.4029.1.S1_at

Description tigr:9632.m03729
TID=OsAffx.4029.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Heavy-metal-associated domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g393709/11heavy metal-associated domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g39310OsAffx.16205.1.S1_at1/114+23185581..23187098hypothetical protein
LOC_Os04g39310OsAffx.25292.1.S1_at1/114+23185581..23187098hypothetical protein
LOC_Os04g39320Os.11920.1.S1_s_at11/114+23189324..23191149expressed protein
LOC_Os04g39320Os.35433.1.S1_at11/114+23189324..23191149expressed protein
LOC_Os04g39330OsAffx.14199.1.S1_at10/114+23193937..23195374hypothetical protein
LOC_Os04g39340NANA4+23197922..23198374hypothetical protein
LOC_Os04g39350Os.12082.1.S1_at11/114+23203407..23204235heavy metal-associated domain containing protein, expressed
LOC_Os04g39360OsAffx.14201.1.S1_at11/114+23208927..23209592heavy metal-associated domain containing protein, expressed
LOC_Os04g39370OsAffx.4029.1.S1_at9/114+23211046..23212874heavy metal-associated domain containing protein
LOC_Os04g39370OsAffx.17908.1.S1_x_at1/114+23211046..23212874heavy metal-associated domain containing protein
LOC_Os04g39380OsAffx.14202.1.S1_at11/114+23216654..23217200expressed protein
LOC_Os04g39390Os.31312.5.S1_x_at2/114+23227047..23230048retrotransposon protein, putative, unclassified
LOC_Os04g39390Os.31312.2.S1_x_at2/114+23227047..23230048retrotransposon protein, putative, unclassified
LOC_Os04g39400OsAffx.22492.1.S1_at1/114+23230939..23237094retrotransposon protein, putative, unclassified
LOC_Os04g39400OsAffx.22492.1.S1_x_at1/114+23230939..23237094retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0046872molecular_functionmetal ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4029.1.S1_at--594--471Chr04:23212511..23212535 (25 bp)
ATCTGCCCAAGAAGCCGGATCCGCC
LOC_Os04g39370
OsAffx.4029.1.S1_at--597--7371Chr04:23211823..23211845 (23 bp)
GTGAGGCGTGGTTTTCCTGGTCCTC
LOC_Os04g39370
OsAffx.4029.1.S1_at--291--10391Chr04:23211812..23211836 (25 bp)
TTTTCCTGGTCCTCATGAGCCGGAG
LOC_Os04g39370
OsAffx.4029.1.S1_at--1037--9271Chr04:23211809..23211833 (25 bp)
TCCTGGTCCTCATGAGCCGGAGAAA
LOC_Os04g39370
OsAffx.4029.1.S1_at--917--8591Chr04:23211806..23211830 (25 bp)
TGGTCCTCATGAGCCGGAGAAAATT
LOC_Os04g39370
OsAffx.4029.1.S1_at--469--4491Chr04:23211794..23211818 (25 bp)
GCCGGAGAAAATTCACCGGGCTTCT
LOC_Os04g39370
OsAffx.4029.1.S1_at--610--8031Chr04:23211791..23211815 (25 bp)
GGAGAAAATTCACCGGGCTTCTCTT
LOC_Os04g39370
OsAffx.4029.1.S1_at--1110--5591NONE
GACAAGAAGCAGGTCGGCTGCAACA
NONE
OsAffx.4029.1.S1_at--684--2711NONE
AAGCAGGTCGGCTGCAACAGCTACA
NONE
OsAffx.4029.1.S1_at--570--2151Chr04:23211097..23211121 (25 bp)
ACAGCTACAGCTGTGGCTGCGCATA
LOC_Os04g39370
OsAffx.4029.1.S1_at--621--3731Chr04:23211093..23211117 (25 bp)
CTACAGCTGTGGCTGCGCATAGTGA
LOC_Os04g39370
Target Sequence 
ATCTGCCCAAGAAGCCGGATCCGCCCAAGCCGGAGCCGCCCAAGCCGCCGGTGAGGCGTGGTTTTCCTGGTCCTCATGAG
CCGGAGAAAATTCACCGGGCTTCTCTTCTTCTTTCAGGACAAGAAGCAGGTCGGCTGCAACAGCTACAGCTGTGGCTGCG
CATAGTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4029.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis