Browse Element(s) Details


Os.12082.1.S1_at

Description gb:AK062816.1
DB_XREF= gi:32972834
TID=Os.12082.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.12082 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-107-E07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-107-E07, full insert sequence.
FL= gb:AK062816.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3935011/11heavy metal-associated domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g39310OsAffx.16205.1.S1_at1/114+23185581..23187098hypothetical protein
LOC_Os04g39310OsAffx.25292.1.S1_at1/114+23185581..23187098hypothetical protein
LOC_Os04g39320Os.11920.1.S1_s_at11/114+23189324..23191149expressed protein
LOC_Os04g39320Os.35433.1.S1_at11/114+23189324..23191149expressed protein
LOC_Os04g39330OsAffx.14199.1.S1_at10/114+23193937..23195374hypothetical protein
LOC_Os04g39340NANA4+23197922..23198374hypothetical protein
LOC_Os04g39350Os.12082.1.S1_at11/114+23203407..23204235heavy metal-associated domain containing protein, expressed
LOC_Os04g39360OsAffx.14201.1.S1_at11/114+23208927..23209592heavy metal-associated domain containing protein, expressed
LOC_Os04g39370OsAffx.4029.1.S1_at9/114+23211046..23212874heavy metal-associated domain containing protein
LOC_Os04g39370OsAffx.17908.1.S1_x_at1/114+23211046..23212874heavy metal-associated domain containing protein
LOC_Os04g39380OsAffx.14202.1.S1_at11/114+23216654..23217200expressed protein
LOC_Os04g39390Os.31312.5.S1_x_at2/114+23227047..23230048retrotransposon protein, putative, unclassified
LOC_Os04g39390Os.31312.2.S1_x_at2/114+23227047..23230048retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0046872molecular_functionmetal ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12082.1.S1_at--1153--8411Chr04:23204107..23204131 (25 bp)
GGCCGATAGCCTTTCTCGTTGGCAT
LOC_Os04g39350
Os.12082.1.S1_at--363--4451Chr04:23204099..23204123 (25 bp)
GCCTTTCTCGTTGGCATTTTATTTC
LOC_Os04g39350
Os.12082.1.S1_at--888--7491Chr04:23203867..23203891 (25 bp)
GTGGTGATGGCCTCCGGCGTGAGCT
LOC_Os04g39350
Os.12082.1.S1_at--53--3371Chr04:23203633..23203657 (25 bp)
CACCACTACGGTGGGATACCGGTGG
LOC_Os04g39350
Os.12082.1.S1_at--352--9111Chr04:23203582..23203606 (25 bp)
TGCTCCATCATGTAATCATATATAG
LOC_Os04g39350
Os.12082.1.S1_at--1145--231Chr04:23203563..23203587 (25 bp)
ATATAGTCACACAGATCGATCGAAT
LOC_Os04g39350
Os.12082.1.S1_at--562--5211Chr04:23203542..23203566 (25 bp)
GAATTTTGCAGTGATTTCTTCAGCG
LOC_Os04g39350
Os.12082.1.S1_at--562--7411Chr04:23203532..23203556 (25 bp)
GTGATTTCTTCAGCGATTTGGTATG
LOC_Os04g39350
Os.12082.1.S1_at--1027--1631Chr04:23203521..23203545 (25 bp)
AGCGATTTGGTATGGCTATGTACAA
LOC_Os04g39350
Os.12082.1.S1_at--535--6611Chr04:23203489..23203513 (25 bp)
GTAGGAGTGGTAGATATACTATACT
LOC_Os04g39350
Os.12082.1.S1_at--505--4911Chr04:23203448..23203472 (25 bp)
GCTTCCTTCGCCTTGTTTAAATCCA
LOC_Os04g39350
Target Sequence 
GGCCGATAGCCTTTCTCGTTGGCATTTTATTTCAAGNAGAACACGATGAAGCAAAAGATCGTGATCAAGGTGAGCATGCC
GTGCGAGAAGAGCCGGTCCAAGGCGATGAAGCTGGTGGTGATGGCCTCCGGCGTGAGCTCGGTGGAGGTCACCGGCGACG
GCAAGGACCGGCTGCAGGTGGTCGGCGACGGCGTCGACGCGGCCTGCCTCGTCACCTGCCTCCGCAAGAAGATCGGCCAC
GCGGAGCTCGTGCAGGTGGAGGAGGTGAAGGAGAAGAAGCCGGAGGAGAAGAAGCCGGAGGAGAAGAAGCCGGAGCCGTG
CTACTGCCCTCATCCCTGCTACTACCACCACCACTACGGTGGGATACCGGTGGCCGTCGGCGACCAGCCGAGCGACCCCT
GCTCCATCATGTAATCATATATAGTCACACAGATCGATCGAATTTTGCAGTGATTTCTTCAGCGATTTGGTATGGCTATG
TACAAAGAAATAGTAGGAGTGGTAGATATACTATACTACTATATCTTTGTGGGGCTTCCTTCGCCTTGTTTAAATCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12082.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis