Browse Element(s) Details


Os.23627.1.A1_at

Description gb:CA760151
DB_XREF= gi:25804190
DB_XREF=BR060009A20D01.ab1
CLONE=BR060009A20D01.ab1
TID=Os.23627.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.23627 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g578606/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g57810NANA2+35403554..35405149Cytochrome P450 family protein
LOC_Os02g57820Os.14536.1.S1_at11/112+35409399..35413595AT hook motif family protein, expressed
LOC_Os02g57830OsAffx.24910.1.S1_at11/112+35415150..35417750expressed protein
LOC_Os02g57830Os.7375.1.S1_at11/112+35415150..35417750expressed protein
LOC_Os02g57840Os.28617.1.S1_at11/112+35418133..35419754Remorin, C-terminal region family protein, expressed
LOC_Os02g57850Os.11920.1.S1_s_at1/112+35420449..35421472hypothetical protein
LOC_Os02g57860Os.23627.1.A1_at6/112+35425163..35426971F-box domain containing protein, expressed
LOC_Os02g57870Os.23608.1.S1_at11/112+35427793..35429999expressed protein
LOC_Os02g57880Os.23175.1.S1_at2/112+35431872..35433039hypothetical protein
LOC_Os02g57890Os.53591.1.S1_at1/112+35435057..35436739F-box domain containing protein
LOC_Os02g57890OsAffx.3098.1.S1_at1/112+35435057..35436739F-box domain containing protein
LOC_Os02g57900OsAffx.12685.1.S1_at9/112+35437471..35441000hypothetical protein
LOC_Os02g57900Os.53104.1.S1_at2/112+35437471..35441000hypothetical protein
LOC_Os02g57900OsAffx.18815.1.S1_x_at1/112+35437471..35441000hypothetical protein
LOC_Os02g57910Os.23175.1.S1_at11/112+35441874..35444096F-box domain containing protein, expressed
LOC_Os02g57920OsAffx.3097.1.S1_s_at11/112+35445714..35456230Cation transporter/ATPase, N-terminus family protein, expressed
LOC_Os02g57920Os.38248.1.S1_at11/112+35445714..35456230Cation transporter/ATPase, N-terminus family protein, expressed
LOC_Os02g57920Os.12010.1.S1_at10/112+35445714..35456230Cation transporter/ATPase, N-terminus family protein, expressed
LOC_Os02g57920Os.12010.1.S1_x_at10/112+35445714..35456230Cation transporter/ATPase, N-terminus family protein, expressed
LOC_Os02g57920OsAffx.3097.1.S1_x_at9/112+35445714..35456230Cation transporter/ATPase, N-terminus family protein, expressed
LOC_Os02g57920Os.39181.1.A1_at8/112+35445714..35456230Cation transporter/ATPase, N-terminus family protein, expressed
LOC_Os02g57920Os.39181.1.A1_x_at4/112+35445714..35456230Cation transporter/ATPase, N-terminus family protein, expressed
LOC_Os02g57920Os.43072.1.S1_x_at2/112+35445714..35456230Cation transporter/ATPase, N-terminus family protein, expressed
LOC_Os02g57920Os.43072.1.S1_at2/112+35445714..35456230Cation transporter/ATPase, N-terminus family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23627.1.A1_at--1029--2551Chr02:35425718..35425738 (21 bp)
AACTGTTGGCGCCTGTTCTTCAAAA
LOC_Os02g57860
Os.23627.1.A1_at--291--10871NONE
TTGGCGCCTGTTCTTCAAAATCTGC
NONE
Os.23627.1.A1_at--907--10851Chr02:35425641..35425665 (25 bp)
TTGGACATGCTTCTTTCTCGAGGCA
LOC_Os02g57860
Os.23627.1.A1_at--44--2111Chr02:35425637..35425661 (25 bp)
ACATGCTTCTTTCTCGAGGCAGCAC
LOC_Os02g57860
Os.23627.1.A1_at--412--6191NONE
GAGGCAGCACCCTTCCTAAAGGAGA
NONE
Os.23627.1.A1_at--638--3611NONE
CTTCCTAAAGGAGATGTGCGCCACG
NONE
Os.23627.1.A1_at--150--3731NONE
CTAAAGGAGATGTGCGCCACGGTTT
NONE
Os.23627.1.A1_at--1020--771NONE
ATGTGCGCCACGGTTTGGGACCATT
NONE
Os.23627.1.A1_at--960--3591Chr02:35425577..35425601 (25 bp)
CATTGGTGTGGGATGCAGACCGACA
LOC_Os02g57860
Os.23627.1.A1_at--702--5491Chr02:35425538..35425562 (25 bp)
GAACAGGGTTACTCTGAAAAAGCAA
LOC_Os02g57860
Os.23627.1.A1_at--802--6771Chr02:35425531..35425555 (25 bp)
GTTACTCTGAAAAAGCAAACGTGGA
LOC_Os02g57860
Target Sequence 
AACTGTTGGCGCCTGTTCTTCAAAATCTGCAAGTTCTGAATCTGGATAAACTCCCAGAAGAATGTGATATTGCTTGGACA
TGCTTCTTTCTCGAGGCAGCACCCTTCCTAAAGGAGATGTGCGCCACGGTTTGGGACCATTGGTGTGGGATGCAGACCGA
CAAGGTGGAACGGGAAGAACAGGGTTACTCTGAAAAAGCAAACGTGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23627.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis