Browse Element(s) Details


OsAffx.3098.1.S1_at

Description tigr:9630.m05783
TID=OsAffx.3098.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Leucine Rich Repeat, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5796011/11Leucine Rich Repeat family protein
LOC_Os02g578901/11F-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g57940Os.53591.1.S1_at11/112+35476075..35478087F-box domain containing protein, expressed
LOC_Os02g57950OsAffx.24912.1.S1_at11/112+35481694..35482183hypothetical protein
LOC_Os02g57960OsAffx.3098.1.S1_at11/112+35492353..35495167Leucine Rich Repeat family protein
LOC_Os02g57960Os.23175.1.S1_at1/112+35492353..35495167Leucine Rich Repeat family protein
LOC_Os02g57970OsAffx.24913.1.S1_at10/112+35495498..35495790hypothetical protein
LOC_Os02g57980Os.26581.1.S1_at11/112+35496214..35501173DEAD/DEAH box helicase family protein, expressed
LOC_Os02g57990Os.9687.1.S1_at11/112+35501294..35505007methionine adenosyltransferase regulatory beta subunit, putative, expressed
LOC_Os02g57990Os.56368.1.S1_at3/112+35501294..35505007methionine adenosyltransferase regulatory beta subunit, putative, expressed
LOC_Os02g58000OsAffx.24914.1.S1_at11/112+35507203..35507472hypothetical protein
LOC_Os02g58010Os.13484.1.S1_at11/112+35509890..35511189expressed protein
LOC_Os02g58010OsAffx.24915.1.S1_at10/112+35509890..35511189expressed protein
LOC_Os02g58020Os.10758.1.S1_a_at11/112+35511679..35517489ABC transporter family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3098.1.S1_at--1019--2831Chr02:35493016..35493040 (25 bp)
AAGTCAATTCCTTCCTAATGTCCTT
LOC_Os02g57960
OsAffx.3098.1.S1_at--625--4311Chr02:35493007..35493031 (25 bp)
CCTTCCTAATGTCCTTTCCATAAGA
LOC_Os02g57960
OsAffx.3098.1.S1_at--479--9751Chr02:35493001..35493025 (25 bp)
TAATGTCCTTTCCATAAGAGACCTG
LOC_Os02g57960
OsAffx.3098.1.S1_at--322--1392Chr02:35492983..35493007 (25 bp)
AGACCTGCACCTCAATTTCTTGAGC
LOC_Os02g57960
OsAffx.3098.1.S1_at--487--6111Chr02:35492850..35492874 (25 bp)
GAGTGCCCGAAACTGCTTGCACATG
LOC_Os02g57960
OsAffx.3098.1.S1_at--809--2551Chr02:35492840..35492864 (25 bp)
AACTGCTTGCACATGTTCTTCGGAA
LOC_Os02g57960
OsAffx.3098.1.S1_at--366--6511Chr02:35492775..35492799 (25 bp)
GATATCGCTTGGACACGCTTCTTTA
LOC_Os02g57960
OsAffx.3098.1.S1_at--515--4131Chr02:35492770..35492794 (25 bp)
CGCTTGGACACGCTTCTTTATTGAA
LOC_Os02g57960
OsAffx.3098.1.S1_at--295--1411Chr02:35492683..35492707 (25 bp)
AGACAGTGTGGAACGGGAAGCACAA
LOC_Os02g57960
OsAffx.3098.1.S1_at--77--2731Chr02:35492666..35492690 (25 bp)
AAGCACAAGGCTTCTGTGACAAAAC
LOC_Os02g57960
OsAffx.3098.1.S1_at--472--10631Chr02:35492434..35492458 (25 bp)
TTCGACAGGGTATCCGGAGGCCATC
LOC_Os02g57960
Target Sequence 
AAGTCAATTCCTTCCTAATGTCCTTTCCATAAGAGACCTGCACCTCAATTTCTTGAGCGAAAAGATTTGGGTTCAGCCAG
AGTGCCCGAAACTGCTTGCACATGTTCTTCGGAATCTGCAAGTTCTGAATCTGGATGAACTCCCTGAAGGATGTGATATC
GCTTGGACACGCTTCTTTATTGAAGCTGCACCTGTCCTGAAGGAGCTATGCATAACAGTTTGGGACCATTGGTGTGAGAT
GGAGACAGACAGTGTGGAACGGGAAGCACAAGGCTTCTGTGACAAAACAGACGTGGAGTGGGAGTCATCTGCGCCTGATG
GTTTTAGGCATTACAACCTGACGAAGCTCACAATCTATGGTTTCCAACCAAATGACAACTTCCTTGGATACATCAGGCAC
ATCATGGAAGCTGCTGTTAACCTAGAGGATGTATCCCTGTACGACAGGAAGGTGCTCGAGTGCTGCGAAGACTTGGATCC
CAAGATCAAGGTTGCTTCGACAGGGTATCCGGAGGCCATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3098.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis