Browse Element(s) Details


Os.10758.1.S1_a_at

Description gb:AK099841.1
DB_XREF= gi:32985050
TID=Os.10758.1
CNT=13
FEA=FLmRNA
TIER=FL+Stack
STK=7
UG=Os.10758 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023121N24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013108I04, full insert sequence.
FL= gb:AK099841.1 gb:AK061860.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5802011/11ABC transporter family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g57960OsAffx.3098.1.S1_at11/112+35492353..35495167Leucine Rich Repeat family protein
LOC_Os02g57960Os.23175.1.S1_at1/112+35492353..35495167Leucine Rich Repeat family protein
LOC_Os02g57970OsAffx.24913.1.S1_at10/112+35495498..35495790hypothetical protein
LOC_Os02g57980Os.26581.1.S1_at11/112+35496214..35501173DEAD/DEAH box helicase family protein, expressed
LOC_Os02g57990Os.9687.1.S1_at11/112+35501294..35505007methionine adenosyltransferase regulatory beta subunit, putative, expressed
LOC_Os02g57990Os.56368.1.S1_at3/112+35501294..35505007methionine adenosyltransferase regulatory beta subunit, putative, expressed
LOC_Os02g58000OsAffx.24914.1.S1_at11/112+35507203..35507472hypothetical protein
LOC_Os02g58010Os.13484.1.S1_at11/112+35509890..35511189expressed protein
LOC_Os02g58010OsAffx.24915.1.S1_at10/112+35509890..35511189expressed protein
LOC_Os02g58020Os.10758.1.S1_a_at11/112+35511679..35517489ABC transporter family protein, expressed
LOC_Os02g58030Os.38001.1.A1_at11/112+35520748..35527178leucine-rich repeat protein, putative, expressed
LOC_Os02g58040OsAffx.24916.1.S1_at10/112+35528270..35530261F-box domain containing protein
LOC_Os02g58050OsAffx.24917.1.S1_at11/112+35534428..35537623hypothetical protein
LOC_Os02g58060NANA2+35539057..35539365hypothetical protein
LOC_Os02g58070Os.8715.1.S1_at11/112+35539685..35542373oxidoreductase, 2OG-Fe oxygenase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005215molecular_functiontransporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10758.1.S1_a_at--828--1011Chr02:35512800..35512824 (25 bp)
AGGTTCGCATGGCTGTATTCAATCA
LOC_Os02g58020
Os.10758.1.S1_a_at--64--8351Chr02:35512790..35512814 (25 bp)
GGCTGTATTCAATCAACACCATGTT
LOC_Os02g58020
Os.10758.1.S1_a_at--640--6251Chr02:35512765..35512789 (25 bp)
GATGGGCTTGATTTAACAGTGAACC
LOC_Os02g58020
Os.10758.1.S1_a_at--831--7351Chr02:35512747..35512771 (25 bp)
GTGAACCCCCTTTTGTACATGATGA
LOC_Os02g58020
Os.10758.1.S1_a_at--1120--8891Chr02:35512570..35512749 (25 bp)
TGAGATGCTACCCTGGTGTACCTGA
LOC_Os02g58020
Os.10758.1.S1_a_at--958--6971Chr02:35512553..35512577 (25 bp)
GTACCTGAACAGAAACTGAGGGCAC
LOC_Os02g58020
Os.10758.1.S1_a_at--492--3971Chr02:35512515..35512539 (25 bp)
CGGTGTTACAGGAAATCTTGCCCTC
LOC_Os02g58020
Os.10758.1.S1_a_at--99--3391Chr02:35512304..35512328 (25 bp)
CAGAAAAGTAGGGTTGCCTTTGCAA
LOC_Os02g58020
Os.10758.1.S1_a_at--949--3351Chr02:35512275..35512299 (25 bp)
CACCTTCAAGAAGCCACACATTATT
LOC_Os02g58020
Os.10758.1.S1_a_at--860--4031Chr02:35511723..35511747 (25 bp)
CGATGTAACATTTACCGGCCTGAGG
LOC_Os02g58020
Os.10758.1.S1_a_at--71--3931Chr02:35511708..35511732 (25 bp)
CGGCCTGAGGCCAAATCATCATTTA
LOC_Os02g58020
Target Sequence 
AGGTTCGCATGGCTGTATTCAATCAACACCATGTTGATGGGCTTGATTTAACAGTGAACCCCCTTTTGTACATGATGAGA
TGCTACCCTGGTGTACCTGAACAGAAACTGAGGGCACANTTGGGTTCTTTCGGTGTTACAGGAAATCTTGCCCTCCAACC
AATGTACACTTTATCAGGTGGTCAGAAAAGTAGGGTTGCCTTTGCAAAGATCACCTTCAAGAAGCCACACATTATTCTTC
TCGATGAGCCTTCTAACCATCTTGATCTGGATGCTGTGGAGGCGCTGATCCAGGGTTTACTCGTTTTCCAGGGAGGAGTG
CTAATGGTGAGTCACGACGAGCACCTGATAACGGGGAGCGTGGATGAGCTTTGGGTGGTGTCGGAAGGCAGGGTGTCGCC
TTTCGCAGGCACGTTCAAGGACTACAAGAAGATGCTCAAGTCTTAATCTAGAGCCAGTGATGATATATATACAGAGACAG
CGANTCTACAAAGAAAGACACCAACATATATATCTGTATCGTGCAGCACCGATGTAACATTTACCGGCCTGAGGCCAAAT
CATCATTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10758.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis