Browse Element(s) Details


Os.56368.1.S1_at

Description gb:AK109932.1
DB_XREF= gi:32995141
TID=Os.56368.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56368 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-152-G02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-152-G02, full insert sequence.
FL= gb:AK109932.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3491011/11expressed protein
LOC_Os02g579903/11methionine adenosyltransferase regulatory beta subunit, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g34900OsAffx.26335.1.S1_at11/114+21019646..21020905hypothetical protein
LOC_Os04g34910Os.56368.1.S1_at11/114+21027564..21028605expressed protein
LOC_Os04g34920OsAffx.26336.1.S1_at11/114+21032968..21033396hypothetical protein
LOC_Os04g34930Os.20064.1.S1_at11/114+21039829..21043365COP9 signalosome complex subunit 8, putative, expressed
LOC_Os04g34930Os.20064.1.S1_a_at11/114+21039829..21043365COP9 signalosome complex subunit 8, putative, expressed
LOC_Os04g34930Os.20064.2.S1_at9/114+21039829..21043365COP9 signalosome complex subunit 8, putative, expressed
LOC_Os04g34940Os.6078.1.S1_at11/114+21045201..21048079expressed protein
LOC_Os04g34950OsAffx.28638.4.S1_at10/114+21051594..21054563hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56368.1.S1_at--93--4791Chr04:21028173..21028197 (25 bp)
GCTGCCTCCTGCTCTGGGAGATGAG
LOC_Os04g34910
Os.56368.1.S1_at--940--9331Chr04:21028320..21028344 (25 bp)
TCGCGTGATTCAACTTTTTTAACAC
LOC_Os04g34910
Os.56368.1.S1_at--247--3154Chr04:21028347..21028371 (25 bp)
AATTCACATGCCCTCTATAATATGT
LOC_Os04g34910
Os.56368.1.S1_at--19--4538Chr09:7341146..7341167 (22 bp)
GCCCTCTATAATATGTCATTAGCCG
NONE
Os.56368.1.S1_at--926--3311Chr04:21028425..21028449 (25 bp)
CACATGCCTCTATGATATATCATTA
LOC_Os04g34910
Os.56368.1.S1_at--425--6971Chr04:21028472..21028496 (25 bp)
GTACCAATTTTTCTATGTTTTCTGT
LOC_Os04g34910
Os.56368.1.S1_at--731--3691Chr04:21028484..21028508 (25 bp)
CTATGTTTTCTGTATTTCTCTTTTC
LOC_Os04g34910
Os.56368.1.S1_at--152--6891Chr04:21028495..21028519 (25 bp)
GTATTTCTCTTTTCTTAGTTCTATT
LOC_Os04g34910
Os.56368.1.S1_at--164--3431Chr04:21028544..21028568 (25 bp)
CGTTTTTGCCCATGGGCCCACCTGT
LOC_Os04g34910
Os.56368.1.S1_at--466--4557Chr08:1797417..1797442 (25 bp)
GCCCACCTGTCAGATCAAAGAGAGA
NONE
Os.56368.1.S1_at--834--1411Chr04:21028581..21028605 (25 bp)
AGAAATATATGTCTGGTTCTGGATC
LOC_Os04g34910
Target Sequence 
GCTGCCTCCTGCTCTGGGAGATGAGGGTGGCGGCGGCGGCCGGATTTGGGGAACCGGCTCACCTCCGCCTCCGCCCCCAG
CCACGCGAGCTCGCTCCGCCCACCTCCGCCATTGGCCGCCAGAGTGCGCTGGGGGGGGCCCTCAAATTCGCGTGATTCAA
CTTTTTTAACACCCAATTCACATGCCCTCTATAATATGTCATTAGCCGGGGACCCTCAAATTCGCGTGCTTCAACTTTTT
TAACACCCAATTCACATGCCTCTATGATATATCATTAGGACTGCTAATTAGTCTATTTGGTACCAATTTTTCTATGTTTT
CTGTATTTCTCTTTTCTTAGTTCTATTTGTATATTTTTCAAAGTTTGTGGACGTTTTTGCCCATGGGCCCACCTGTCAGA
TCAAAGAGAGAAATATATGTCTGGTTCTGGATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56368.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis