Browse Element(s) Details


OsAffx.26336.1.S1_at

Description tigr:9632.m03357
TID=OsAffx.26336.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3492011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g34900OsAffx.26335.1.S1_at11/114+21019646..21020905hypothetical protein
LOC_Os04g34910Os.56368.1.S1_at11/114+21027564..21028605expressed protein
LOC_Os04g34920OsAffx.26336.1.S1_at11/114+21032968..21033396hypothetical protein
LOC_Os04g34930Os.20064.1.S1_at11/114+21039829..21043365COP9 signalosome complex subunit 8, putative, expressed
LOC_Os04g34930Os.20064.1.S1_a_at11/114+21039829..21043365COP9 signalosome complex subunit 8, putative, expressed
LOC_Os04g34930Os.20064.2.S1_at9/114+21039829..21043365COP9 signalosome complex subunit 8, putative, expressed
LOC_Os04g34940Os.6078.1.S1_at11/114+21045201..21048079expressed protein
LOC_Os04g34950OsAffx.28638.4.S1_at10/114+21051594..21054563hypothetical protein
LOC_Os04g34960NANA4+21055689..21060070retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26336.1.S1_at--516--7491Chr04:21033333..21033357 (25 bp)
GTGGTCGTCTCCAGCGACAAGATGA
LOC_Os04g34920
OsAffx.26336.1.S1_at--510--1551Chr04:21033257..21033281 (25 bp)
AGCTTGTCAGCGAGTGTTCCGACGG
LOC_Os04g34920
OsAffx.26336.1.S1_at--156--1151Chr04:21033200..21033224 (25 bp)
AGTCGGAACGGGTCAGACAACAGGT
LOC_Os04g34920
OsAffx.26336.1.S1_at--150--3271Chr04:21033183..21033207 (25 bp)
CAACAGGTAGAATGGCTCGCCGGCG
LOC_Os04g34920
OsAffx.26336.1.S1_at--854--8391Chr04:21033162..21033186 (25 bp)
GGCGCCAAGGAAGACGAGCGTTCCA
LOC_Os04g34920
OsAffx.26336.1.S1_at--609--3971Chr04:21033148..21033172 (25 bp)
CGAGCGTTCCAGGATAAAACGGCCA
LOC_Os04g34920
OsAffx.26336.1.S1_at--161--8451Chr04:21033128..21033152 (25 bp)
GGCCAGAGCCGCAACGCCAGAAAGT
LOC_Os04g34920
OsAffx.26336.1.S1_at--760--5551Chr04:21033109..21033133 (25 bp)
GAAAGTCAAGGAGACGCCGGCACTC
LOC_Os04g34920
OsAffx.26336.1.S1_at--555--1292Chr07:25965611..25965631 (21 bp)
AGACGCCGGCACTCCGGGTAGACGA
NONE
OsAffx.26336.1.S1_at--334--6951Chr04:21033081..21033105 (25 bp)
GTAGACGAGTGCTCCGACGCTGCCG
LOC_Os04g34920
OsAffx.26336.1.S1_at--741--4191Chr04:21033038..21033062 (25 bp)
CCCTGTTCTCTGAGCTGTGGAAGGA
LOC_Os04g34920
Target Sequence 
GTGGTCGTCTCCAGCGACAAGATGATGACCTCGTCCGGGGGTGGACGCTGCCCGGAGCCGGGCGAGGCCGACGAGGAGCT
TGTCAGCGAGTGTTCCGACGGGGGAGAAGATGGCGGAGAGGGAACGCAGAGGAAGTCGGAACGGGTCAGACAACAGGTAG
AATGGCTCGCCGGCGCCAAGGAAGACGAGCGTTCCAGGATAAAACGGCCAGAGCCGCAACGCCAGAAAGTCAAGGAGACG
CCGGCACTCCGGGTAGACGAGTGCTCCGACGCTGCCGCTCGCTGCTACCGCCGCCCCCTGTTCTCTGAGCTGTGGAAGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26336.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis