Browse Element(s) Details


Os.20064.1.S1_at

Description gb:AY336991.1
DB_XREF= gi:33243053
TID=Os.20064.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.20064 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) COP9 mRNA, complete cds.
PROD=COP9
FL= gb:AY336991.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3493011/11COP9 signalosome complex subunit 8, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g34900OsAffx.26335.1.S1_at11/114+21019646..21020905hypothetical protein
LOC_Os04g34910Os.56368.1.S1_at11/114+21027564..21028605expressed protein
LOC_Os04g34920OsAffx.26336.1.S1_at11/114+21032968..21033396hypothetical protein
LOC_Os04g34930Os.20064.1.S1_at11/114+21039829..21043365COP9 signalosome complex subunit 8, putative, expressed
LOC_Os04g34930Os.20064.1.S1_a_at11/114+21039829..21043365COP9 signalosome complex subunit 8, putative, expressed
LOC_Os04g34930Os.20064.2.S1_at9/114+21039829..21043365COP9 signalosome complex subunit 8, putative, expressed
LOC_Os04g34940Os.6078.1.S1_at11/114+21045201..21048079expressed protein
LOC_Os04g34950OsAffx.28638.4.S1_at10/114+21051594..21054563hypothetical protein
LOC_Os04g34960NANA4+21055689..21060070retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g34970OsAffx.26337.1.S1_at11/114+21061485..21062219AP2 domain containing protein, expressed
LOC_Os04g34984Os.26731.1.S1_at11/114+21068001..21081373Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os04g34984Os.53079.1.S1_at11/114+21068001..21081373Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os04g34984Os.26731.2.A1_at7/114+21068001..21081373Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os04g34984Os.49743.1.S1_at1/114+21068001..21081373Ubiquitin carboxyl-terminal hydrolase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000338biological_processprotein deneddylation
GO:0009416biological_processresponse to light stimulus
GO:0009640biological_processphotomorphogenesis
GO:0009753biological_processresponse to jasmonic acid stimulus
GO:0005634cellular_componentnucleus
GO:0008180cellular_componentsignalosome complex
GO:0004222molecular_functionmetalloendopeptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20064.1.S1_at--783--4091Chr04:21042594..21042741 (25 bp)
CCTTCCTAGGTCACCACTTTGTGGT
LOC_Os04g34930
Os.20064.1.S1_at--427--1151Chr04:21042558..21042582 (25 bp)
AGTCGGGAGATTCAGATGTGCATAC
LOC_Os04g34930
Os.20064.1.S1_at--188--6271Chr04:21042544..21042568 (25 bp)
GATGTGCATACATATACTTCATGGA
LOC_Os04g34930
Os.20064.1.S1_at--640--7071Chr04:21042519..21042543 (25 bp)
GTAATTGTGGAAACGATTTATCTGC
LOC_Os04g34930
Os.20064.1.S1_at--816--6531Chr04:21042505..21042529 (25 bp)
GATTTATCTGCACAATCAGGCTGAA
LOC_Os04g34930
Os.20064.1.S1_at--477--911Chr04:21042488..21042512 (25 bp)
AGGCTGAATCAGCTTCCTTAATGAA
LOC_Os04g34930
Os.20064.1.S1_at--95--8991Chr04:21042484..21042508 (25 bp)
TGAATCAGCTTCCTTAATGAATACG
LOC_Os04g34930
Os.20064.1.S1_at--101--5211Chr04:21042466..21042490 (25 bp)
GAATACGCAAAGTTACTATTAGTAG
LOC_Os04g34930
Os.20064.1.S1_at--1077--6931Chr04:21042445..21042469 (25 bp)
GTAGAGTGCCCGTTAGTAGAGTTTT
LOC_Os04g34930
Os.20064.1.S1_at--795--10431Chr04:21042433..21042457 (25 bp)
TTAGTAGAGTTTTGTGCTGCGTAGT
LOC_Os04g34930
Os.20064.1.S1_at--1054--8671Chr04:21042421..21042445 (25 bp)
TGTGCTGCGTAGTGTAATGGTTAAA
LOC_Os04g34930
Target Sequence 
CCTTCCTAGGTCACCACTTTGTGGTGTGGGTTGGGAAGTCGGGAGATTCAGATGTGCATACATATACTTCATGGAGTAAT
TGTGGAAACGATTTATCTGCACAATCAGGCTGAATCAGCTTCCTTAATGAATACGCAAAGTTACTATTAGTAGAGTGCCC
GTTAGTAGAGTTTTGTGCTGCGTAGTGTAATGGTTAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20064.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis