Browse Element(s) Details


Os.53079.1.S1_at

Description gb:AK070730.1
DB_XREF= gi:32980753
TID=Os.53079.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53079 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023063K10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023063K10, full insert sequence.
FL= gb:AK070730.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3498411/11Ubiquitin carboxyl-terminal hydrolase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g34930Os.20064.1.S1_at11/114+21039829..21043365COP9 signalosome complex subunit 8, putative, expressed
LOC_Os04g34930Os.20064.1.S1_a_at11/114+21039829..21043365COP9 signalosome complex subunit 8, putative, expressed
LOC_Os04g34930Os.20064.2.S1_at9/114+21039829..21043365COP9 signalosome complex subunit 8, putative, expressed
LOC_Os04g34940Os.6078.1.S1_at11/114+21045201..21048079expressed protein
LOC_Os04g34950OsAffx.28638.4.S1_at10/114+21051594..21054563hypothetical protein
LOC_Os04g34960NANA4+21055689..21060070retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g34970OsAffx.26337.1.S1_at11/114+21061485..21062219AP2 domain containing protein, expressed
LOC_Os04g34984Os.26731.1.S1_at11/114+21068001..21081373Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os04g34984Os.53079.1.S1_at11/114+21068001..21081373Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os04g34984Os.26731.2.A1_at7/114+21068001..21081373Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os04g34984Os.49743.1.S1_at1/114+21068001..21081373Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os04g35000Os.54995.1.S1_at10/114+21084231..21086695expressed protein
LOC_Os04g35010Os.30520.2.S1_x_at11/114+21089326..21092486Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os04g35010Os.30520.1.S1_at11/114+21089326..21092486Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os04g35010Os.30520.2.S1_at9/114+21089326..21092486Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os04g35020Os.45970.1.S1_at11/114+21094373..21097882Cellulose synthase family protein, expressed
LOC_Os04g35030Os.26822.1.S1_at11/114+21100754..21106265cellulose synthase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009910biological_processnegative regulation of flower development
GO:0031062biological_processpositive regulation of histone methylation
GO:0004843molecular_functionubiquitin-specific protease activity
GO:0042800molecular_functionhistone lysine N-methyltransferase activity (H3-K4 specific)
GO:0046975molecular_functionhistone lysine N-methyltransferase activity (H3-K36 specific)
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53079.1.S1_at--24--5811Chr04:21080131..21080291 (25 bp)
GACGCTCATTTTACGGATGCAGATA
LOC_Os04g34984
Os.53079.1.S1_at--1074--5131Chr04:21080551..21080575 (25 bp)
GCAACCTGTTGAGTAGTAAATTAAC
LOC_Os04g34984
Os.53079.1.S1_at--1125--3131Chr04:21080569..21080593 (25 bp)
AATTAACTTCTTTTCTGGACAATGG
LOC_Os04g34984
Os.53079.1.S1_at--869--9771Chr04:21080622..21080646 (25 bp)
TAAGAACACATACAACCATGTCTAT
LOC_Os04g34984
Os.53079.1.S1_at--678--5472Chr04:21080647..21080671 (25 bp)
GAACACTAGGATTTGAACCTTGGTG
LOC_Os04g34984
Os.53079.1.S1_at--850--1691Chr04:21080662..21080686 (25 bp)
AACCTTGGTGGGTGGATCCACGACT
LOC_Os04g34984
Os.53079.1.S1_at--377--1411Chr04:21080707..21080731 (25 bp)
AGCACGCTTCCCTAGTAAATTTACT
LOC_Os04g34984
Os.53079.1.S1_at--1097--7011Chr04:21080721..21080745 (25 bp)
GTAAATTTACTTAGGGACAACACAT
LOC_Os04g34984
Os.53079.1.S1_at--106--8151Chr04:21080735..21080759 (25 bp)
GGACAACACATTTTTTAGGGAGATC
LOC_Os04g34984
Os.53079.1.S1_at--934--1051Chr04:21080751..21080775 (25 bp)
AGGGAGATCTCCAAAAAAGTTTATG
LOC_Os04g34984
Os.53079.1.S1_at--27--6491Chr04:21080783..21080807 (25 bp)
GATACTCTTTTGTTTGAGAACTTAA
LOC_Os04g34984
Target Sequence 
GACGCTCATTTTACGGATGCAGATAGTAGGTTCTTGTCTTCATCATCATTGACAGACAAGTTATATGGCCTCTCATCTGT
CGTGGAACACTACGGCGTATGTGGAGGTGGGCATTATGCAGCTTACCGGAGAGTAACGCCAAATTCGGATTCTAATGAAC
CAGTGCAATCTCTTGCAAGTTTTAGAAAGGAGTGGCTTTACGTCTCGGATGATCATGTGTCCCATGTTTCAGAGTGTGAA
GTTTTGGCAGCGGAGGCCACCCTGCTTTTCTACGAAAGGCTGTAGCAACCTGTTGAGTAGTAAATTAACTTCTTTTCTGG
ACAATGGAAGTATAACTTCCAGCCTCTGCAACAACTAAGAACACATACAACCATGTCTATGAACACTAGGATTTGAACCT
TGGTGGGTGGATCCACGACTCCACCACCACATCAACGGGAAGCACGCTTCCCTAGTAAATTTACTTAGGGACAACACATT
TTTTAGGGAGATCTCCAAAAAAGTTTATGAATAATTGATACTCTTTTGTTTGAGAACTTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53079.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis