Browse Element(s) Details


Os.26731.2.A1_at

Description gb:BM420301
DB_XREF= gi:18387103
DB_XREF=U009F02
CLONE=U009F02
TID=Os.26731.2
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.26731 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OSJNBa0042L16.9 (OSJNBa0042L16.9), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g349847/11Ubiquitin carboxyl-terminal hydrolase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g34930Os.20064.1.S1_at11/114+21039829..21043365COP9 signalosome complex subunit 8, putative, expressed
LOC_Os04g34930Os.20064.1.S1_a_at11/114+21039829..21043365COP9 signalosome complex subunit 8, putative, expressed
LOC_Os04g34930Os.20064.2.S1_at9/114+21039829..21043365COP9 signalosome complex subunit 8, putative, expressed
LOC_Os04g34940Os.6078.1.S1_at11/114+21045201..21048079expressed protein
LOC_Os04g34950OsAffx.28638.4.S1_at10/114+21051594..21054563hypothetical protein
LOC_Os04g34960NANA4+21055689..21060070retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g34970OsAffx.26337.1.S1_at11/114+21061485..21062219AP2 domain containing protein, expressed
LOC_Os04g34984Os.26731.1.S1_at11/114+21068001..21081373Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os04g34984Os.53079.1.S1_at11/114+21068001..21081373Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os04g34984Os.26731.2.A1_at7/114+21068001..21081373Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os04g34984Os.49743.1.S1_at1/114+21068001..21081373Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os04g35000Os.54995.1.S1_at10/114+21084231..21086695expressed protein
LOC_Os04g35010Os.30520.2.S1_x_at11/114+21089326..21092486Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os04g35010Os.30520.1.S1_at11/114+21089326..21092486Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os04g35010Os.30520.2.S1_at9/114+21089326..21092486Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os04g35020Os.45970.1.S1_at11/114+21094373..21097882Cellulose synthase family protein, expressed
LOC_Os04g35030Os.26822.1.S1_at11/114+21100754..21106265cellulose synthase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009910biological_processnegative regulation of flower development
GO:0031062biological_processpositive regulation of histone methylation
GO:0004843molecular_functionubiquitin-specific protease activity
GO:0042800molecular_functionhistone lysine N-methyltransferase activity (H3-K4 specific)
GO:0046975molecular_functionhistone lysine N-methyltransferase activity (H3-K36 specific)
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26731.2.A1_at--1144--8051NONE
GGCCCAAAATACACAATTCCACAGG
NONE
Os.26731.2.A1_at--1068--3151NONE
AATTCCACAGGCACAAGGGCCTTTG
NONE
Os.26731.2.A1_at--51--5331Chr04:21081062..21081086 (25 bp)
GAAGGGCTAAATTCTGTTCTACTGC
LOC_Os04g34984
Os.26731.2.A1_at--47--4391NONE
CCAAGGATGTTATTTTAGCTGAATG
NONE
Os.26731.2.A1_at--195--1611NONE
AGCTGAATGGACACCTTGGCATAGC
NONE
Os.26731.2.A1_at--718--291Chr04:21081131..21081155 (25 bp)
ATAGAGGAGTTATGTGTGTCAGCGT
LOC_Os04g34984
Os.26731.2.A1_at--101--7111Chr04:21081148..21081172 (25 bp)
GTCAGCGTGTGTGCTTTCGGTTTTT
LOC_Os04g34984
Os.26731.2.A1_at--928--3771Chr04:21081258..21081282 (25 bp)
CTCTGATCTTCTCTTTTGCTAGACA
LOC_Os04g34984
Os.26731.2.A1_at--640--5651Chr04:21081285..21081310 (25 bp)
GACAGATACACTTGCAGCTAAAGCT
LOC_Os04g34984
Os.26731.2.A1_at--1138--1551Chr04:21081301..21081325 (25 bp)
AGCTAAAGCTGGCTCTACCAGAATT
LOC_Os04g34984
Os.26731.2.A1_at--1030--3391Chr04:21081319..21081343 (25 bp)
CAGAATTTACCTTTTTAGCTGGAAT
LOC_Os04g34984
Target Sequence 
GGCCCAAAATACACAATTCCACAGGCACAAGGGCCTTTGCAGAAGGGGAAGCAGCATGAAGGGCTAAATTCTGTTCTACT
GCTGCCAAGGATGTTATTTTAGCTGAATGGACACCTTGGCATAGCNAATAGAGGAGTTATGTGTGTCAGCGTGTGTGCTT
TCGGTTTTTTTTTTCAATTTCTTCTCTTTTTTTTTTCCTCTCTTTCTCTTTTCTTCTTCTTTATTTCTTATTTCTTTTTC
TTTTTTGGCTTGGCTCCTCTGATCTTCTCTTTTGCTAGACAAGACAGATACACTTGCAGCTAAAGCTGGCTCTACCAGAA
TTTACCTTTTTAGCTGGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26731.2.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis