Browse Element(s) Details


OsAffx.26337.1.S1_at

Description tigr:9632.m03363
TID=OsAffx.26337.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=AP2 domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3497011/11AP2 domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g34930Os.20064.1.S1_at11/114+21039829..21043365COP9 signalosome complex subunit 8, putative, expressed
LOC_Os04g34930Os.20064.1.S1_a_at11/114+21039829..21043365COP9 signalosome complex subunit 8, putative, expressed
LOC_Os04g34930Os.20064.2.S1_at9/114+21039829..21043365COP9 signalosome complex subunit 8, putative, expressed
LOC_Os04g34940Os.6078.1.S1_at11/114+21045201..21048079expressed protein
LOC_Os04g34950OsAffx.28638.4.S1_at10/114+21051594..21054563hypothetical protein
LOC_Os04g34960NANA4+21055689..21060070retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g34970OsAffx.26337.1.S1_at11/114+21061485..21062219AP2 domain containing protein, expressed
LOC_Os04g34984Os.26731.1.S1_at11/114+21068001..21081373Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os04g34984Os.53079.1.S1_at11/114+21068001..21081373Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os04g34984Os.26731.2.A1_at7/114+21068001..21081373Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os04g34984Os.49743.1.S1_at1/114+21068001..21081373Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os04g35000Os.54995.1.S1_at10/114+21084231..21086695expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26337.1.S1_at--219--5771Chr04:21061736..21061760 (25 bp)
GACGTCGCGGACTGCCTCGACTACT
LOC_Os04g34970
OsAffx.26337.1.S1_at--655--9171Chr04:21061724..21061748 (25 bp)
TGCCTCGACTACTCCAGGATCCTGG
LOC_Os04g34970
OsAffx.26337.1.S1_at--24--9371Chr04:21061720..21061744 (25 bp)
TCGACTACTCCAGGATCCTGGCGGG
LOC_Os04g34970
OsAffx.26337.1.S1_at--1--7631Chr04:21061640..21061664 (25 bp)
GGGAACGGCCGCTTCTTGCACTCGT
LOC_Os04g34970
OsAffx.26337.1.S1_at--1007--10551Chr04:21061628..21061652 (25 bp)
TTCTTGCACTCGTGGAGCATTGGCA
LOC_Os04g34970
OsAffx.26337.1.S1_at--1052--9011Chr04:21061624..21061648 (25 bp)
TGCACTCGTGGAGCATTGGCACGTC
LOC_Os04g34970
OsAffx.26337.1.S1_at--293--9431Chr04:21061619..21061643 (25 bp)
TCGTGGAGCATTGGCACGTCGCCGT
LOC_Os04g34970
OsAffx.26337.1.S1_at--25--10631Chr04:21061528..21061552 (25 bp)
TTCGTCCTCTGTTTCATGGCGGTAA
LOC_Os04g34970
OsAffx.26337.1.S1_at--1056--7251Chr04:21061525..21061549 (25 bp)
GTCCTCTGTTTCATGGCGGTAACGG
LOC_Os04g34970
OsAffx.26337.1.S1_at--1021--4271Chr04:21061523..21061547 (25 bp)
CCTCTGTTTCATGGCGGTAACGGCT
LOC_Os04g34970
OsAffx.26337.1.S1_at--252--9631Chr04:21061515..21061539 (25 bp)
TCATGGCGGTAACGGCTGGGAGCAA
LOC_Os04g34970
Target Sequence 
GACGTCGCGGACTGCCTCGACTACTCCAGGATCCTGGCGGGGGCGCCGGAGCGGCCGACGAGCTCCACCGTCCCGGACGG
GTTCTTCGGCGGCGGCGGGAACGGCCGCTTCTTGCACTCGTGGAGCATTGGCACGTCGCCGTCGCCGTCGGGCTCGGGCT
CGGGCGGAGCCGGCGGTGGCGGTGGCGGTGGCGGTGGCGGCGCCCCTGTTCGTCCTCTGTTTCATGGCGGTAACGGCTGG
GAGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26337.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis