Browse Element(s) Details


Os.49743.1.S1_at

Description gb:AK120074.1
DB_XREF= gi:37989697
TID=Os.49743.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49743 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013007J15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013007J15, full insert sequence.
FL= gb:AK120074.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g349841/11Ubiquitin carboxyl-terminal hydrolase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g34930Os.20064.1.S1_at11/114+21039829..21043365COP9 signalosome complex subunit 8, putative, expressed
LOC_Os04g34930Os.20064.1.S1_a_at11/114+21039829..21043365COP9 signalosome complex subunit 8, putative, expressed
LOC_Os04g34930Os.20064.2.S1_at9/114+21039829..21043365COP9 signalosome complex subunit 8, putative, expressed
LOC_Os04g34940Os.6078.1.S1_at11/114+21045201..21048079expressed protein
LOC_Os04g34950OsAffx.28638.4.S1_at10/114+21051594..21054563hypothetical protein
LOC_Os04g34960NANA4+21055689..21060070retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g34970OsAffx.26337.1.S1_at11/114+21061485..21062219AP2 domain containing protein, expressed
LOC_Os04g34984Os.26731.1.S1_at11/114+21068001..21081373Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os04g34984Os.53079.1.S1_at11/114+21068001..21081373Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os04g34984Os.26731.2.A1_at7/114+21068001..21081373Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os04g34984Os.49743.1.S1_at1/114+21068001..21081373Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os04g35000Os.54995.1.S1_at10/114+21084231..21086695expressed protein
LOC_Os04g35010Os.30520.2.S1_x_at11/114+21089326..21092486Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os04g35010Os.30520.1.S1_at11/114+21089326..21092486Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os04g35010Os.30520.2.S1_at9/114+21089326..21092486Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os04g35020Os.45970.1.S1_at11/114+21094373..21097882Cellulose synthase family protein, expressed
LOC_Os04g35030Os.26822.1.S1_at11/114+21100754..21106265cellulose synthase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009910biological_processnegative regulation of flower development
GO:0031062biological_processpositive regulation of histone methylation
GO:0004843molecular_functionubiquitin-specific protease activity
GO:0042800molecular_functionhistone lysine N-methyltransferase activity (H3-K4 specific)
GO:0046975molecular_functionhistone lysine N-methyltransferase activity (H3-K36 specific)
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49743.1.S1_at--929--8811Chr01:493023..493047 (25 bp)
TGATGAACACGCTGGGATGACCGGA
NONE
Os.49743.1.S1_at--201--2471Chr01:493018..493042 (25 bp)
AACACGCTGGGATGACCGGAGACAA
NONE
Os.49743.1.S1_at--1145--671Chr01:493007..493031 (25 bp)
ATGACCGGAGACAAGGCCGTCAGCC
NONE
Os.49743.1.S1_at--183--5991NONE
GAGACAAGGCCGTCAGCCTATGGCG
NONE
Os.49743.1.S1_at--402--891NONE
AGGCCGTCAGCCTATGGCGGCAGCA
NONE
Os.49743.1.S1_at--596--1511Chr01:492973..492997 (25 bp)
AGCAGCAGTGGCTCACATCGACGGC
NONE
Os.49743.1.S1_at--568--1531Chr01:492970..492994 (25 bp)
AGCAGTGGCTCACATCGACGGCACA
NONE
Os.49743.1.S1_at--30--4931Chr01:492773..492797 (25 bp)
GCTTGCCGCTTGCAGTTGCAGAGAA
NONE
Os.49743.1.S1_at--113--1732Chr08:15803974..15803993 (20 bp)
ACCGTAGTCAAAACCACCGATGGAT
NONE
Os.49743.1.S1_at--740--1711Chr01:492618..492642 (25 bp)
ACCACCGATGGATCTAATTTGCACT
NONE
Os.49743.1.S1_at--66--4054Chr09:10233523..10233767 (25 bp)
CGATGGATCTAATTTGCACTGGTTT
NONE
Target Sequence 
TGATGAACACGCTGGGATGACCGGAGACAAGGCCGTCAGCCTATGGCGGCAGCAGCAGTGGCTCACATCGACGGCACACC
CAAGGGGATCCGCGGATGGACGACGGCGGCAACGCGTCACCATCGTCCTCGCTCTCCAGCGTCGGCGCGGCTTGCCCTCC
AGCGTCGCAGCTTCCGCCATCGCCGCCTCGTCGCCCGCTGCCTCCTCCTCTCCCGCCTCGCCCCGACGACCTCTCCCCAC
CCGCCGGGCGGCTTGCCGCTTGCAGTTGCAGAGAAGGAGAAAAGTGAGAGAGAGAGAGAGAGGAGGGATGGAGAGGAAAT
GGAAGAGAGAGGGTGCTGACGTGGCATCCTGACATGTGGGTTCCACGCTGAGTCAGCCGTCACGTCGGACAAAACCGTAG
TCAAAACCACCGATGGATCTAATTTGCACTGGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49743.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis