Browse Element(s) Details


Os.26822.1.S1_at

Description gb:NM_185226.1
DB_XREF= gi:34897537
GEN=OSJNBa0042L16.6
TID=Os.26822.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.26822 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OSJNBa0042L16.6 (OSJNBa0042L16.6), mRNA
DEF=Oryza sativa (japonica cultivar-group) OSJNBa0042L16.6 (OSJNBa0042L16.6), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3503011/11cellulose synthase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g34984Os.26731.1.S1_at11/114+21068001..21081373Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os04g34984Os.53079.1.S1_at11/114+21068001..21081373Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os04g34984Os.26731.2.A1_at7/114+21068001..21081373Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os04g34984Os.49743.1.S1_at1/114+21068001..21081373Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os04g35000Os.54995.1.S1_at10/114+21084231..21086695expressed protein
LOC_Os04g35010Os.30520.2.S1_x_at11/114+21089326..21092486Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os04g35010Os.30520.1.S1_at11/114+21089326..21092486Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os04g35010Os.30520.2.S1_at9/114+21089326..21092486Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os04g35020Os.45970.1.S1_at11/114+21094373..21097882Cellulose synthase family protein, expressed
LOC_Os04g35030Os.26822.1.S1_at11/114+21100754..21106265cellulose synthase family protein, putative, expressed
LOC_Os04g35050Os.19099.1.S1_x_at1/114+21112026..21113155retrotransposon, putative, centromere-specific
LOC_Os04g35060Os.18679.1.S1_at11/114+21123052..21130812nicotinate phosphoribosyltransferase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000271biological_processpolysaccharide biosynthesis
GO:0016740molecular_functiontransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0016759molecular_functioncellulose synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26822.1.S1_at--743--6691Chr04:21101615..21101639 (25 bp)
GTTCCTTATTGCCTACTCACAAATC
LOC_Os04g35030
Os.26822.1.S1_at--305--8511Chr04:21101334..21101358 (25 bp)
TGGAATGTGGGCTCTCTGTACGTGC
LOC_Os04g35030
Os.26822.1.S1_at--1098--9451Chr04:21101320..21101344 (25 bp)
TCTGTACGTGCCTGGTGGAACAACC
LOC_Os04g35030
Os.26822.1.S1_at--1132--651Chr04:21101290..21101314 (25 bp)
ATGCAACGGATCATTTCAGCCTCTG
LOC_Os04g35030
Os.26822.1.S1_at--949--4451Chr04:21101272..21101296 (25 bp)
GCCTCTGCATGGCTACTAGCATTTT
LOC_Os04g35030
Os.26822.1.S1_at--240--3591Chr04:21101253..21101277 (25 bp)
CATTTTTTACTGTGCTCCTCAAGAC
LOC_Os04g35030
Os.26822.1.S1_at--648--6011Chr04:21101140..21101164 (25 bp)
GAGAGATTCACCTTTGACGCATCAC
LOC_Os04g35030
Os.26822.1.S1_at--45--4251Chr04:21101103..21101127 (25 bp)
CCGTTACGGCGCTGACAATGTTGAA
LOC_Os04g35030
Os.26822.1.S1_at--348--2471Chr04:21101033..21101057 (25 bp)
AACAGAAGACGTGCCTGGTGGTCCG
LOC_Os04g35030
Os.26822.1.S1_at--379--9631Chr04:21100995..21101019 (25 bp)
TCATGTCTTGTGGATGGCTGCTACT
LOC_Os04g35030
Os.26822.1.S1_at--593--4771Chr04:21100979..21101003 (25 bp)
GCTGCTACTGTGCTTATTGCCATTT
LOC_Os04g35030
Target Sequence 
GTTCCTTATTGCCTACTCACAAATCAATCCTTCTTGTCAAAGGCATCAGAAAATTGTTTCAACATCACATTAGCACTATT
CTTGACCTATAATACATACAACTTCGTGGAGTACATGGAATGTGGGCTCTCTGTACGTGCCTGGTGGAACAACCACAGAA
TGCAACGGATCATTTCAGCCTCTGCATGGCTACTAGCATTTTTTACTGTGCTCCTCAAGACCATAGGCCTCTCCGAGACT
GTGTTCGAGGTCACCCGTAAGGAGAAGAGCACATCGGATGGCAATGGCCAAAACGATGAGGTTGACCCGGAGAGATTCAC
CTTTGACGCATCACCAGTGTTCATCCCCGTTACGGCGCTGACAATGTTGAACATTGTTGCAATCACAATTGGTACATGGA
GGGCAGTTTTTGGGACAACAGAAGACGTGCCTGGTGGTCCGGGTATAAGTGAATTCATGTCTTGTGGATGGCTGCTACTG
TGCTTATTGCCATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26822.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis