Browse Element(s) Details


Os.30520.1.S1_at

Description gb:AK108728.1
DB_XREF= gi:32993937
TID=Os.30520.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.30520 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OSJNBa0042L16.8 (OSJNBa0042L16.8), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-150-C12, full insert sequence.
FL= gb:AK108728.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3501011/11Helix-loop-helix DNA-binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g34984Os.26731.1.S1_at11/114+21068001..21081373Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os04g34984Os.53079.1.S1_at11/114+21068001..21081373Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os04g34984Os.26731.2.A1_at7/114+21068001..21081373Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os04g34984Os.49743.1.S1_at1/114+21068001..21081373Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os04g35000Os.54995.1.S1_at10/114+21084231..21086695expressed protein
LOC_Os04g35010Os.30520.2.S1_x_at11/114+21089326..21092486Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os04g35010Os.30520.1.S1_at11/114+21089326..21092486Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os04g35010Os.30520.2.S1_at9/114+21089326..21092486Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os04g35020Os.45970.1.S1_at11/114+21094373..21097882Cellulose synthase family protein, expressed
LOC_Os04g35030Os.26822.1.S1_at11/114+21100754..21106265cellulose synthase family protein, putative, expressed
LOC_Os04g35050Os.19099.1.S1_x_at1/114+21112026..21113155retrotransposon, putative, centromere-specific

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.30520.1.S1_at--647--871Chr04:21092213..21092237 (25 bp)
AGGCTCGCCGAATGAGACGAATTTG
LOC_Os04g35010
Os.30520.1.S1_at--650--10771Chr04:21092235..21092259 (25 bp)
TTGATCGTCCTGAATTTGCTGTCCC
LOC_Os04g35010
Os.30520.1.S1_at--615--10711Chr04:21092262..21092286 (25 bp)
TTGCTACTCTCATCGAGGATTCGTA
LOC_Os04g35010
Os.30520.1.S1_at--315--1011Chr04:21092277..21092301 (25 bp)
AGGATTCGTACTCTCAGCATTTGGA
LOC_Os04g35010
Os.30520.1.S1_at--131--7011Chr04:21092284..21092308 (25 bp)
GTACTCTCAGCATTTGGAATAACTA
LOC_Os04g35010
Os.30520.1.S1_at--591--2531Chr04:21092304..21092328 (25 bp)
AACTAAAACCAGTCTTTGCTTTCAG
LOC_Os04g35010
Os.30520.1.S1_at--728--3671Chr04:21092317..21092341 (25 bp)
CTTTGCTTTCAGTTTAGTCGTTGAA
LOC_Os04g35010
Os.30520.1.S1_at--945--10011Chr04:21092331..21092355 (25 bp)
TAGTCGTTGAACTTGTTACTTTTTG
LOC_Os04g35010
Os.30520.1.S1_at--934--6831Chr04:21092371..21092395 (25 bp)
GTTTCCGAACATAAGTACACCACCA
LOC_Os04g35010
Os.30520.1.S1_at--844--7011Chr04:21092385..21092409 (25 bp)
GTACACCACCAGGAGGTAAAAGTGT
LOC_Os04g35010
Os.30520.1.S1_at--342--9411Chr04:21092430..21092454 (25 bp)
TCGTCGTTGTTGGAGTTATAGACAT
LOC_Os04g35010
Target Sequence 
AGGCTCGCCGAATGAGACGAATTTGATCGTCCTGAATTTGCTGTCCCCCTTGCTACTCTCATCGAGGATTCGTACTCTCA
GCATTTGGAATAACTAAAACCAGTCTTTGCTTTCAGTTTAGTCGTTGAACTTGTTACTTTTTGGATAATTCGGTTAAAGT
TTCCGAACATAAGTACACCACCAGGAGGTAAAAGTGTAAAATCCGTTGATGTTGTCGTCGTCGTTGTTGGAGTTATAGAC
AT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.30520.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis