Browse Element(s) Details


Os.54995.1.S1_at

Description gb:AK107268.1
DB_XREF= gi:32992477
TID=Os.54995.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54995 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-125-H08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-125-H08, full insert sequence.
FL= gb:AK107268.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3500010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g34960NANA4+21055689..21060070retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g34970OsAffx.26337.1.S1_at11/114+21061485..21062219AP2 domain containing protein, expressed
LOC_Os04g34984Os.26731.1.S1_at11/114+21068001..21081373Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os04g34984Os.53079.1.S1_at11/114+21068001..21081373Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os04g34984Os.26731.2.A1_at7/114+21068001..21081373Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os04g34984Os.49743.1.S1_at1/114+21068001..21081373Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os04g35000Os.54995.1.S1_at10/114+21084231..21086695expressed protein
LOC_Os04g35010Os.30520.2.S1_x_at11/114+21089326..21092486Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os04g35010Os.30520.1.S1_at11/114+21089326..21092486Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os04g35010Os.30520.2.S1_at9/114+21089326..21092486Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os04g35020Os.45970.1.S1_at11/114+21094373..21097882Cellulose synthase family protein, expressed
LOC_Os04g35030Os.26822.1.S1_at11/114+21100754..21106265cellulose synthase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54995.1.S1_at--784--391Chr04:21086041..21086065 (25 bp)
ATCAGGGCGGCCAGAAGAACCTCGT
LOC_Os04g35000
Os.54995.1.S1_at--610--9031Chr04:21086158..21086331 (25 bp)
TGCACTGCCATCTGAGTCCAGGGAG
LOC_Os04g35000
Os.54995.1.S1_at--34--8091Chr04:21086328..21086352 (25 bp)
GGAGCTCTAGCTCTCAGAACCTGAC
LOC_Os04g35000
Os.54995.1.S1_at--401--5811Chr04:21086350..21086374 (25 bp)
GACGCCTCTGGACAAGTTCAAGCTG
LOC_Os04g35000
Os.54995.1.S1_at--504--1611Chr04:21086385..21086409 (25 bp)
AGCTGATGCTTTGGGTGATCTCCGT
LOC_Os04g35000
Os.54995.1.S1_at--49--9511Chr04:21086403..21086427 (25 bp)
TCTCCGTCTGAGAAGAATGCCTATA
LOC_Os04g35000
Os.54995.1.S1_at--288--7151Chr04:21086478..21086502 (25 bp)
GTCTTCGTCGGAATGAACAAGTCTT
LOC_Os04g35000
Os.54995.1.S1_at--509--211Chr04:21086505..21086529 (25 bp)
ATTTGCTTCAAATTTAGTCGTCGTT
LOC_Os04g35000
Os.54995.1.S1_at--1003--7191Chr04:21086521..21086545 (25 bp)
GTCGTCGTTGTTGAATTGAACTGCT
LOC_Os04g35000
Os.54995.1.S1_at--377--2231NONE
AAATTTACCATTCTTCGCAAGTCTG
NONE
Os.54995.1.S1_at--418--8171Chr04:21086610..21086634 (25 bp)
GGAACCTCCAGTTAATTGTCGTTTG
LOC_Os04g35000
Target Sequence 
ATCAGGGCGGCCAGAAGAACCTCGTCGCCGGCGCGGTGAGCGTCCTGGAGCGCCACCACATCGACGTCGTTACGGCCACC
GTCTCGGCATCCGAGCAGGGCGACAACCTGATCAGCCTGCACTGCCATCTGAGTCCAGGGAGCTCTAGCTCTCAGAACCT
GACGCCTCTGGACAAGTTCAAGCTGGCAATGTCAGAGCTGATGCTTTGGGTGATCTCCGTCTGAGAAGAATGCCTATAAA
TGCCATGAATAAAAAAGCAAACCTTTTCTGGGTTTAGCTGCTTCCGTCGTCTTCGTCGGAATGAACAAGTCTTTGATTTG
CTTCAAATTTAGTCGTCGTTGTTGAATTGAACTGCTTTAAATTTACCATTCTTCGCAAGTCTGGTTTGAGTTTTCAGACA
TAATAAGTTGTGTATGAGGTGGAACCTCCAGTTAATTGTCGTTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54995.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis