Browse Element(s) Details


Os.45970.1.S1_at

Description gb:NM_185227.1
DB_XREF= gi:34897539
GEN=OSJNBa0042L16.7
TID=Os.45970.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.45970 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OSJNBa0042L16.7 (OSJNBa0042L16.7), mRNA
DEF=Oryza sativa (japonica cultivar-group) OSJNBa0042L16.7 (OSJNBa0042L16.7), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3502011/11Cellulose synthase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g34984Os.26731.1.S1_at11/114+21068001..21081373Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os04g34984Os.53079.1.S1_at11/114+21068001..21081373Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os04g34984Os.26731.2.A1_at7/114+21068001..21081373Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os04g34984Os.49743.1.S1_at1/114+21068001..21081373Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os04g35000Os.54995.1.S1_at10/114+21084231..21086695expressed protein
LOC_Os04g35010Os.30520.2.S1_x_at11/114+21089326..21092486Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os04g35010Os.30520.1.S1_at11/114+21089326..21092486Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os04g35010Os.30520.2.S1_at9/114+21089326..21092486Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os04g35020Os.45970.1.S1_at11/114+21094373..21097882Cellulose synthase family protein, expressed
LOC_Os04g35030Os.26822.1.S1_at11/114+21100754..21106265cellulose synthase family protein, putative, expressed
LOC_Os04g35050Os.19099.1.S1_x_at1/114+21112026..21113155retrotransposon, putative, centromere-specific

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Gene Ontology Classification
GO idTypeName
GO:0000271biological_processpolysaccharide biosynthesis
GO:0016740molecular_functiontransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0016759molecular_functioncellulose synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.45970.1.S1_at--1117--1431Chr04:21094904..21094928 (25 bp)
AGAAGATGGTTTCAGCGTCCCGTTA
LOC_Os04g35020
Os.45970.1.S1_at--1087--4231Chr04:21094885..21094909 (25 bp)
CCGTTAGCCCTATTCATATCCTATA
LOC_Os04g35020
Os.45970.1.S1_at--694--4211Chr04:21094821..21094845 (25 bp)
CCGCCCGTGCATGGTGGAACAATCA
LOC_Os04g35020
Os.45970.1.S1_at--1131--651Chr04:21094792..21094816 (25 bp)
ATGCAACGGATCATCTCGGTCTCTG
LOC_Os04g35020
Os.45970.1.S1_at--68--8151Chr04:21094764..21094788 (25 bp)
GGACACTAGCATTTCTTACCGTGCT
LOC_Os04g35020
Os.45970.1.S1_at--269--10411Chr04:21094729..21094753 (25 bp)
TTAGGCCTCTCCGAAACTGTTTTTG
LOC_Os04g35020
Os.45970.1.S1_at--877--5491Chr04:21094717..21094741 (25 bp)
GAAACTGTTTTTGAGGTCACCGGCA
LOC_Os04g35020
Os.45970.1.S1_at--331--2471Chr04:21094663..21094687 (25 bp)
AACACCGATGGTGCTGACCCTGGGA
LOC_Os04g35020
Os.45970.1.S1_at--282--4251Chr04:21094605..21094629 (25 bp)
CCGTGACGGCACTTGCGATGTTAAA
LOC_Os04g35020
Os.45970.1.S1_at--881--10471Chr04:21094585..21094609 (25 bp)
TTAAACATCGTTGCGGTCACTGTCG
LOC_Os04g35020
Os.45970.1.S1_at--587--7311Chr04:21094472..21094496 (25 bp)
GTGCTTCTTCCCGTTTGTAAGAGGG
LOC_Os04g35020
Target Sequence 
AGAAGATGGTTTCAGCGTCCCGTTAGCCCTATTCATATCCTATAACACATACAACTTCATGGAGTACATGGCGTGCGGGC
TCTCCGCCCGTGCATGGTGGAACAATCATAGGATGCAACGGATCATCTCGGTCTCTGCCTGGACACTAGCATTTCTTACC
GTGCTCCTCAAGTCCTTAGGCCTCTCCGAAACTGTTTTTGAGGTCACCGGCAAGGACAAAAGCATGTCTGATGACGATGA
CAACACCGATGGTGCTGACCCTGGGAGGTTCACCTTCGACTCATTGCCGGTGTTCATCCCCGTGACGGCACTTGCGATGT
TAAACATCGTTGCGGTCACTGTCGGAGCATGTAGGGTAGCTTTCGGGACAGCGGAAGGTGTGCCCTGTGCCCCGGGTATC
GGCGAATTCATGTGTTGTGGGTGGCTGGTGCTGTGCTTCTTCCCGTTTGTAAGAGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.45970.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis