Browse Element(s) Details


OsAffx.28638.4.S1_at

Description tigr:9632.m03361
TID=OsAffx.28638.4
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3495010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g34910Os.56368.1.S1_at11/114+21027564..21028605expressed protein
LOC_Os04g34920OsAffx.26336.1.S1_at11/114+21032968..21033396hypothetical protein
LOC_Os04g34930Os.20064.1.S1_at11/114+21039829..21043365COP9 signalosome complex subunit 8, putative, expressed
LOC_Os04g34930Os.20064.1.S1_a_at11/114+21039829..21043365COP9 signalosome complex subunit 8, putative, expressed
LOC_Os04g34930Os.20064.2.S1_at9/114+21039829..21043365COP9 signalosome complex subunit 8, putative, expressed
LOC_Os04g34940Os.6078.1.S1_at11/114+21045201..21048079expressed protein
LOC_Os04g34950OsAffx.28638.4.S1_at10/114+21051594..21054563hypothetical protein
LOC_Os04g34960NANA4+21055689..21060070retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g34970OsAffx.26337.1.S1_at11/114+21061485..21062219AP2 domain containing protein, expressed
LOC_Os04g34984Os.26731.1.S1_at11/114+21068001..21081373Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os04g34984Os.53079.1.S1_at11/114+21068001..21081373Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os04g34984Os.26731.2.A1_at7/114+21068001..21081373Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os04g34984Os.49743.1.S1_at1/114+21068001..21081373Ubiquitin carboxyl-terminal hydrolase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28638.4.S1_at--278--851Chr04:21053321..21053345 (25 bp)
ATGGACAACCATGTCATGTGCCCCT
LOC_Os04g34950
OsAffx.28638.4.S1_at--649--10571Chr04:21053297..21053321 (25 bp)
TTCTACACGCAGGAGCCGAAGACAT
LOC_Os04g34950
OsAffx.28638.4.S1_at--854--8071Chr04:21053286..21053310 (25 bp)
GGAGCCGAAGACATCAAACCACATT
LOC_Os04g34950
OsAffx.28638.4.S1_at--203--10731Chr04:21053245..21053269 (25 bp)
TTGCTAGACAGGTGTGGCACAAGCT
LOC_Os04g34950
OsAffx.28638.4.S1_at--559--2691NONE
AAGCTGCTCATCGAGACACCGTGGG
NONE
OsAffx.28638.4.S1_at--93--10671Chr04:21051810..21051834 (25 bp)
TTCCTCCAACCAACTGAGCGAGCAG
LOC_Os04g34950
OsAffx.28638.4.S1_at--914--1351Chr04:21051777..21051801 (25 bp)
AGAGCAAGTGCCATCGGTTCGCGAC
LOC_Os04g34950
OsAffx.28638.4.S1_at--59--4111Chr04:21051756..21051780 (25 bp)
CGACATGGCGTCGACAGCGAAACAA
LOC_Os04g34950
OsAffx.28638.4.S1_at--770--3211Chr04:21051678..21051702 (25 bp)
CAAGGTCAGGACTGTGCGGAGCATA
LOC_Os04g34950
OsAffx.28638.4.S1_at--1076--4671Chr04:21051663..21051687 (25 bp)
GCGGAGCATATCTCATAATCCCACC
LOC_Os04g34950
OsAffx.28638.4.S1_at--234--1971Chr04:21051626..21051650 (25 bp)
ACTCCGTTCGTTGAGGACCTTGTAG
LOC_Os04g34950
Target Sequence 
ATGGACAACCATGTCATGTGCCCCTTCTACACGCAGGAGCCGAAGACATCAAACCACATTCTAATGGAATGTGCTGTTGC
TAGACAGGTGTGGCACAAGCTGCTCATCGAGACACCGTGGGTTCCTCTGCCCCCAATCGTCTCTACCCTACATTCCTCCA
ACCAACTGAGCGAGCAGGGGACAACAGAGCAAGTGCCATCGGTTCGCGACATGGCGTCGACAGCGAAACAAGCAGCCGGG
GGTGGCGCTGACCGTGTCGACGGTGGAGCAAGCGGCAATGGTGGCAAGGTCAGGACTGTGCGGAGCATATCTCATAATCC
CACCCTCTCTTTCTTCACTCCGTTCGTTGAGGACCTTGTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28638.4.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis