Browse Element(s) Details


OsAffx.24917.1.S1_at

Description tigr:9630.m05792
TID=OsAffx.24917.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5805011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g58010Os.13484.1.S1_at11/112+35509890..35511189expressed protein
LOC_Os02g58010OsAffx.24915.1.S1_at10/112+35509890..35511189expressed protein
LOC_Os02g58020Os.10758.1.S1_a_at11/112+35511679..35517489ABC transporter family protein, expressed
LOC_Os02g58030Os.38001.1.A1_at11/112+35520748..35527178leucine-rich repeat protein, putative, expressed
LOC_Os02g58040OsAffx.24916.1.S1_at10/112+35528270..35530261F-box domain containing protein
LOC_Os02g58050OsAffx.24917.1.S1_at11/112+35534428..35537623hypothetical protein
LOC_Os02g58060NANA2+35539057..35539365hypothetical protein
LOC_Os02g58070Os.8715.1.S1_at11/112+35539685..35542373oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os02g58080Os.26062.1.S1_a_at11/112+35543031..35547556sucrose transporter 2, putative, expressed
LOC_Os02g58090Os.26501.1.S1_at11/112+35547995..35553041Splicing factor 3B subunit 2, putative, expressed
LOC_Os02g58100OsAffx.3100.1.S1_at11/112+35553789..35555508expressed protein
LOC_Os02g58110OsAffx.12687.1.S1_at11/112+35556810..35561862expressed protein
LOC_Os02g58120Os.52638.1.S1_at10/112+35561852..35564542expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24917.1.S1_at--97--5831Chr02:35534458..35534482 (25 bp)
GACCGCGATGTGATGGTCTCAAATA
LOC_Os02g58050
OsAffx.24917.1.S1_at--1031--9271Chr02:35536404..35536428 (25 bp)
TCCGCAGCCGAACCAGCAACTGGAT
LOC_Os02g58050
OsAffx.24917.1.S1_at--85--5151Chr02:35536419..35536443 (25 bp)
GCAACTGGATGGTTTTAGCCGGTTT
LOC_Os02g58050
OsAffx.24917.1.S1_at--449--4471Chr02:35536436..35536460 (25 bp)
GCCGGTTTGGGCTGGTTCTAGCAAA
LOC_Os02g58050
OsAffx.24917.1.S1_at--388--5311Chr02:35536730..35536754 (25 bp)
GAAGGTTCAACCTCTAACACTGGCC
LOC_Os02g58050
OsAffx.24917.1.S1_at--80--3931Chr02:35536749..35536773 (25 bp)
CTGGCCATCCAGAATATTAAGATTT
LOC_Os02g58050
OsAffx.24917.1.S1_at--704--2811Chr02:35536767..35536791 (25 bp)
AAGATTTCTTTCACATACACAGATG
LOC_Os02g58050
OsAffx.24917.1.S1_at--109--8192Chr02:35536800..35536824 (25 bp)
TGGAGATTGGTTCATGGTTTACCTG
LOC_Os02g58050
OsAffx.24917.1.S1_at--1025--831Chr02:35536838..35536862 (25 bp)
ATGGAGCACCCGCTGCAATGCTGCA
LOC_Os02g58050
OsAffx.24917.1.S1_at--94--3031Chr02:35536854..35537382 (25 bp)
AATGCTGCACTAGAGGAGATGCTCA
LOC_Os02g58050
OsAffx.24917.1.S1_at--624--8491Chr02:35537533..35537557 (25 bp)
TAACAATGGTGTGTACCCGGCGGCA
LOC_Os02g58050
Target Sequence 
GACCGCGATGTGATGGTCTCAAATAATACCCAAGTAAATTTTTCTTTGTTGGTTCCGCAGCCGAACCAGCAACTGGATGG
TTTTAGCCGGTTTGGGCTGGTTCTAGCAAATTTGAGGGATGCTGAGTTGAAGGTTCAACCTCTAACACTGGCCATCCAGA
ATATTAAGATTTCTTTCACATACACAGATGAGCTGAGTTGGAGATTGGTTCATGGTTTACCTGAAAGTGTGAGAGGATGG
AGCACCCGCTGCAATGCTGCACTAGAGGAGATGCTCAACCTGGGGGGCCTTTCTTCAAAGGCAAAGGCCTGGGAGAAGCG
AGTGAAGAAGCTGAACATCAGTAACAATGGTGTGTACCCGGCGGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24917.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis