Browse Element(s) Details


OsAffx.3100.1.S1_at

Description tigr:9630.m05797
TID=OsAffx.3100.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5810011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g58040OsAffx.24916.1.S1_at10/112+35528270..35530261F-box domain containing protein
LOC_Os02g58050OsAffx.24917.1.S1_at11/112+35534428..35537623hypothetical protein
LOC_Os02g58060NANA2+35539057..35539365hypothetical protein
LOC_Os02g58070Os.8715.1.S1_at11/112+35539685..35542373oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os02g58080Os.26062.1.S1_a_at11/112+35543031..35547556sucrose transporter 2, putative, expressed
LOC_Os02g58090Os.26501.1.S1_at11/112+35547995..35553041Splicing factor 3B subunit 2, putative, expressed
LOC_Os02g58100OsAffx.3100.1.S1_at11/112+35553789..35555508expressed protein
LOC_Os02g58110OsAffx.12687.1.S1_at11/112+35556810..35561862expressed protein
LOC_Os02g58120Os.52638.1.S1_at10/112+35561852..35564542expressed protein
LOC_Os02g58139Os.49282.1.S1_x_at11/112+35566509..35572288pentatricopeptide, putative, expressed
LOC_Os02g58139Os.49282.2.S1_at11/112+35566509..35572288pentatricopeptide, putative, expressed
LOC_Os02g58160Os.53108.1.S1_at11/112+35572680..35576955expressed protein
LOC_Os02g58150Os.6227.1.S1_at11/112+35579093..35583372expressed protein
LOC_Os02g58150OsAffx.4983.2.S1_x_at11/112+35579093..35583372expressed protein
LOC_Os02g58150Os.13735.1.S1_at8/112+35579093..35583372expressed protein
LOC_Os02g58150OsAffx.2831.1.S1_x_at1/112+35579093..35583372expressed protein
LOC_Os02g58150OsAffx.2831.1.S1_at1/112+35579093..35583372expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3100.1.S1_at--912--6291Chr02:35554586..35554610 (25 bp)
GATGACGACGACTCAAGCCATGATA
LOC_Os02g58100
OsAffx.3100.1.S1_at--480--6491Chr02:35554607..35554631 (25 bp)
GATAGCTCTGAATCGGTTTCTGCAA
LOC_Os02g58100
OsAffx.3100.1.S1_at--655--7271Chr02:35554638..35554662 (25 bp)
GTGCCGGCTGCCTGAATTTTCAGTA
LOC_Os02g58100
OsAffx.3100.1.S1_at--196--3731Chr02:35554681..35554705 (25 bp)
CTACGAGAGAGTCCCGCTAGCAGAT
LOC_Os02g58100
OsAffx.3100.1.S1_at--289--5051Chr02:35554814..35554838 (25 bp)
GCAGAGCTGGCTCAGCATTATCCAT
LOC_Os02g58100
OsAffx.3100.1.S1_at--947--151Chr02:35554830..35554854 (25 bp)
ATTATCCATGCTTGACATCTCTCAG
LOC_Os02g58100
OsAffx.3100.1.S1_at--242--10531Chr02:35554867..35554891 (25 bp)
TTCACCTTCGAGCTGGATGTCTGTA
LOC_Os02g58100
OsAffx.3100.1.S1_at--383--6271Chr02:35554882..35555097 (25 bp)
GATGTCTGTAGCATGGTACCCGATT
LOC_Os02g58100
OsAffx.3100.1.S1_at--599--6531Chr02:35555094..35555118 (25 bp)
GATTTATCATATCCCAGCTCGTGGA
LOC_Os02g58100
OsAffx.3100.1.S1_at--360--6551Chr02:35555130..35555154 (25 bp)
GTTATCTACGTGTTTCCTAACCTAT
LOC_Os02g58100
OsAffx.3100.1.S1_at--812--4291Chr02:35555160..35555316 (25 bp)
CCTCTCCTCAGTTTTCCAAGATAAT
LOC_Os02g58100
Target Sequence 
GATGACGACGACTCAAGCCATGATAGCTCTGAATCGGTTTCTGCAAAGCAAGGTGCCGGCTGCCTGAATTTTCAGTACAA
CGAGTGGAGCTCGCCCTACGAGAGAGTCCCGCTAGCAGATAAGGTGGCAGAGCTGGCTCAGCATTATCCATGCTTGACAT
CTCTCAGCAGTGCACAACTTTCACCTTCGAGCTGGATGTCTGTAGCATGGTACCCGATTTATCATATCCCAGCTCGTGGA
AACCTCAAGGGGTTATCTACGTGTTTCCTAACCTATCATTCCCTCTCCTCAGTTTTCCAAGATAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3100.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis