Browse Element(s) Details


OsAffx.2831.1.S1_x_at

Description tigr:9630.m03086
TID=OsAffx.2831.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to DNA repair protein RAD5 protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g325709/11SWI/SNF-related matrix-associated actin-dependent regulatorof chromatin subfamily A member 3-like 2, putative, expressed
LOC_Os02g581501/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g32550OsAffx.24540.1.S1_x_at11/112+19265567..19267344expressed protein
LOC_Os02g32560OsAffx.23314.1.S1_at2/112+19271177..19273284retrotransposon protein, putative, LINE subclass
LOC_Os02g32570Os.51680.1.A1_at11/112+19288880..19297378SWI/SNF-related matrix-associated actin-dependent regulatorof chromatin subfamily A member 3-like 2, putative, expressed
LOC_Os02g32570OsAffx.2831.1.S1_at9/112+19288880..19297378SWI/SNF-related matrix-associated actin-dependent regulatorof chromatin subfamily A member 3-like 2, putative, expressed
LOC_Os02g32570OsAffx.2831.1.S1_x_at9/112+19288880..19297378SWI/SNF-related matrix-associated actin-dependent regulatorof chromatin subfamily A member 3-like 2, putative, expressed
LOC_Os02g32580Os.50831.1.S1_at11/112+19297528..19298752expressed protein
LOC_Os02g32590Os.23778.1.S1_at11/112+19303888..19307189heat stress transcription factor A3, putative, expressed
LOC_Os02g32600OsAffx.13151.1.S1_x_at2/112+19316127..19317590expressed protein
LOC_Os02g32610Os.8653.1.S1_at11/112+19319590..19326261Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006281biological_processDNA repair
GO:0009294biological_processDNA mediated transformation
GO:0003677molecular_functionDNA binding
GO:0004386molecular_functionhelicase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2831.1.S1_x_at--302--9211Chr02:19293897..19293921 (25 bp)
TCCAAGATTTCTTTCCTTCTACAGG
LOC_Os02g32570
OsAffx.2831.1.S1_x_at--313--2831Chr02:19293928..19293952 (25 bp)
AAGTTCTTCGCACTTCTGGTGCAAA
LOC_Os02g32570
OsAffx.2831.1.S1_x_at--780--5711Chr02:19293974..19293998 (25 bp)
GACTGCATTTCTGGATCTCTTACAA
LOC_Os02g32570
OsAffx.2831.1.S1_x_at--988--3151NONE
AATTCCACTTTCCAGGGCAACAGAA
NONE
OsAffx.2831.1.S1_x_at--704--10612Chr02:19294623..19295007 (25 bp)
TTCGTGTATCAGTACCAGACATAAT
LOC_Os02g32570
OsAffx.2831.1.S1_x_at--1139--10231Chr02:19295701..19295722 (22 bp)
TTTGGTTCTGCTTATGTCCCTGAAA
LOC_Os02g32570
OsAffx.2831.1.S1_x_at--481--8211Chr02:19295735..19295759 (25 bp)
GGAATAAACCTAACTGCTGCATCTA
LOC_Os02g32570
OsAffx.2831.1.S1_x_at--392--3011NONE
AATGCATTTGTCATGGATCCTTGGT
NONE
OsAffx.2831.1.S1_x_at--609--571Chr02:19296718..19296742 (25 bp)
ATCCTTGGTGGAATCCTGCTGTTGA
LOC_Os02g32570
OsAffx.2831.1.S1_x_at--740--2211Chr02:19296746..19296770 (25 bp)
ACAAGCTATCATGCGGATCCATCGA
LOC_Os02g32570
OsAffx.2831.1.S1_x_at--848--2811Chr02:19296800..19297000 (25 bp)
AAGATTCATCGTCAAGGGCACTGTC
LOC_Os02g32570
Target Sequence 
TCCAAGATTTCTTTCCTTCTACAGGAGCTAGAAGTTCTTCGCACTTCTGGTGCAAAGAGCATCATTTTTAGCCAGTGGAC
TGCATTTCTGGATCTCTTACAAATTCCACTTTCCAGGGCAACAGAAAATTTTGTTGTTCCAAATCATGGATACTATGAAA
ATTCGTGTATCAGTACCAGACATAATTTCTCATTTGCTAGACTGGATGGAACCTTGAATCTTCAGCAGAGAGAGAAAGTA
ATCAAGGAGTTTTCTGAGGACAAAAGCATTTTGGTTCTGCTTATGTCCCTGAAAGCTGGTGGTGTTGGAATAAACCTAAC
TGCTGCATCTAATGCATTTGTCATGGATCCTTGGTGGAATCCTGCTGTTGAAGAACAAGCTATCATGCGGATCCATCGAA
TTGGTCAAACAAAGAGTGTTTCCATCAAAAGATTCATCGTCAAGGGCACTGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2831.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis