Browse Element(s) Details


Os.50831.1.S1_at

Description gb:AK058851.1
DB_XREF= gi:32968869
TID=Os.50831.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50831 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-005-A09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-005-A09, full insert sequence.
FL= gb:AK058851.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3258011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g32560OsAffx.23314.1.S1_at2/112+19271177..19273284retrotransposon protein, putative, LINE subclass
LOC_Os02g32570Os.51680.1.A1_at11/112+19288880..19297378SWI/SNF-related matrix-associated actin-dependent regulatorof chromatin subfamily A member 3-like 2, putative, expressed
LOC_Os02g32570OsAffx.2831.1.S1_at9/112+19288880..19297378SWI/SNF-related matrix-associated actin-dependent regulatorof chromatin subfamily A member 3-like 2, putative, expressed
LOC_Os02g32570OsAffx.2831.1.S1_x_at9/112+19288880..19297378SWI/SNF-related matrix-associated actin-dependent regulatorof chromatin subfamily A member 3-like 2, putative, expressed
LOC_Os02g32580Os.50831.1.S1_at11/112+19297528..19298752expressed protein
LOC_Os02g32590Os.23778.1.S1_at11/112+19303888..19307189heat stress transcription factor A3, putative, expressed
LOC_Os02g32600OsAffx.13151.1.S1_x_at2/112+19316127..19317590expressed protein
LOC_Os02g32610Os.8653.1.S1_at11/112+19319590..19326261Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50831.1.S1_at--403--5371Chr02:19298012..19298036 (25 bp)
GAAGACGAGGCCAACTCTGCCAAGA
LOC_Os02g32580
Os.50831.1.S1_at--285--2751Chr02:19297991..19298015 (25 bp)
AAGAAGCCCAGCGTGTTGGCTCCAT
LOC_Os02g32580
Os.50831.1.S1_at--950--851Chr02:19297968..19297992 (25 bp)
ATGGCTAGGGTTCCTTCACTTCTGG
LOC_Os02g32580
Os.50831.1.S1_at--26--3931Chr02:19297947..19297971 (25 bp)
CTGGCCGCTGCTGTAGGTTATAGTA
LOC_Os02g32580
Os.50831.1.S1_at--751--3091Chr02:19297916..19297940 (25 bp)
AATACTGCCATTTGTGTAGGTCACA
LOC_Os02g32580
Os.50831.1.S1_at--1006--7051Chr02:19297891..19297915 (25 bp)
GTAAGCTGCATGTATCACCTGTTTT
LOC_Os02g32580
Os.50831.1.S1_at--50--651Chr02:19297852..19297876 (25 bp)
ATGCAGCATCTGTGAACTATGGTAA
LOC_Os02g32580
Os.50831.1.S1_at--606--8551Chr02:19297754..19297778 (25 bp)
TGGAGATCCGATTTGTTGTGGCTCA
LOC_Os02g32580
Os.50831.1.S1_at--424--6591Chr02:19297653..19297677 (25 bp)
GATTGAACATATACTGCCCGCATGC
LOC_Os02g32580
Os.50831.1.S1_at--990--2431Chr02:19297628..19297652 (25 bp)
AAAAGTCAGACGCTTCAATCTCCTT
LOC_Os02g32580
Os.50831.1.S1_at--692--5331Chr02:19297557..19297581 (25 bp)
GAAGAGTACTTTTATTGGTCCAGAA
LOC_Os02g32580
Target Sequence 
GAAGACGAGGCCAACTCTGCCAAGAAGCCCAGCGTGTTGGCTCCATGGCTAGGGTTCCTTCACTTCTGGCCGCTGCTGTA
GGTTATAGTACTAGTTAATACTGCCATTTGTGTAGGTCACAGTAAGCTGCATGTATCACCTGTTTTTTTTGGATAATGGT
ATGCAGCATCTGTGAACTATGGTAATCTTAGTTTCTTTTTTCTACTAAATGTATATATACATTAGTGTTTACTAAGTGAA
ATTATACTGTTACAGTTTTGGAGATCCGATTTGTTGTGGCTCATAATTGGCATACAAAGTCGAATTGTTCATTTGGATGT
AGCTGCAAATTGTACAATGCGAACTTAGATTCTGTATGAGATTGAACATATACTGCCCGCATGCAAAAGTCAGACGCTTC
AATCTCCTTCTCTGGGGAATCCAATTCTATTTTTCTACAAAACTGTCAATTCTCAGAAGAGTACTTTTATTGGTCCAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50831.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis