Browse Element(s) Details


Os.51680.1.A1_at

Description gb:AK063375.1
DB_XREF= gi:32973393
TID=Os.51680.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51680 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-114-F01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-114-F01, full insert sequence.
FL= gb:AK063375.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3257011/11SWI/SNF-related matrix-associated actin-dependent regulatorof chromatin subfamily A member 3-like 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g32550OsAffx.24540.1.S1_x_at11/112+19265567..19267344expressed protein
LOC_Os02g32560OsAffx.23314.1.S1_at2/112+19271177..19273284retrotransposon protein, putative, LINE subclass
LOC_Os02g32570Os.51680.1.A1_at11/112+19288880..19297378SWI/SNF-related matrix-associated actin-dependent regulatorof chromatin subfamily A member 3-like 2, putative, expressed
LOC_Os02g32570OsAffx.2831.1.S1_at9/112+19288880..19297378SWI/SNF-related matrix-associated actin-dependent regulatorof chromatin subfamily A member 3-like 2, putative, expressed
LOC_Os02g32570OsAffx.2831.1.S1_x_at9/112+19288880..19297378SWI/SNF-related matrix-associated actin-dependent regulatorof chromatin subfamily A member 3-like 2, putative, expressed
LOC_Os02g32580Os.50831.1.S1_at11/112+19297528..19298752expressed protein
LOC_Os02g32590Os.23778.1.S1_at11/112+19303888..19307189heat stress transcription factor A3, putative, expressed
LOC_Os02g32600OsAffx.13151.1.S1_x_at2/112+19316127..19317590expressed protein
LOC_Os02g32610Os.8653.1.S1_at11/112+19319590..19326261Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006281biological_processDNA repair
GO:0009294biological_processDNA mediated transformation
GO:0003677molecular_functionDNA binding
GO:0004386molecular_functionhelicase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51680.1.A1_at--968--9351Chr02:19297199..19297223 (25 bp)
TCGAAATTCAGATATCATACGCCTT
LOC_Os02g32570
Os.51680.1.A1_at--535--6511Chr02:19297209..19297233 (25 bp)
GATATCATACGCCTTCTGGCATTTT
LOC_Os02g32570
Os.51680.1.A1_at--566--3571Chr02:19297214..19297238 (25 bp)
CATACGCCTTCTGGCATTTTGCTGT
LOC_Os02g32570
Os.51680.1.A1_at--963--4711Chr02:19297234..19297258 (25 bp)
GCTGTTGTTGTATACCTTTCTTGTG
LOC_Os02g32570
Os.51680.1.A1_at--189--1751Chr02:19297247..19297271 (25 bp)
ACCTTTCTTGTGTATACTAATATGT
LOC_Os02g32570
Os.51680.1.A1_at--110--671Chr02:19297272..19297296 (25 bp)
ATGAATAGTGGCGTGGAAGAAAGAT
LOC_Os02g32570
Os.51680.1.A1_at--479--5371Chr02:19297287..19297311 (25 bp)
GAAGAAAGATTGAGAGCTGACAGAA
LOC_Os02g32570
Os.51680.1.A1_at--715--4751Chr02:19297302..19297326 (25 bp)
GCTGACAGAAGAGGTAATTCATTGC
LOC_Os02g32570
Os.51680.1.A1_at--971--5351Chr02:19297309..19297333 (25 bp)
GAAGAGGTAATTCATTGCATATGTA
LOC_Os02g32570
Os.51680.1.A1_at--1005--4951Chr02:19297325..19297349 (25 bp)
GCATATGTATGTACAACATGGGCTT
LOC_Os02g32570
Os.51680.1.A1_at--306--10111Chr02:19297332..19297356 (25 bp)
TATGTACAACATGGGCTTAATTAAT
LOC_Os02g32570
Target Sequence 
TCGAAATTCAGATATCATACGCCTTCTGGCATTTTGCTGTTGTTGTATACCTTTCTTGTGTATACTAATATGTATGAATA
GTGGCGTGGAAGAAAGATTGAGAGCTGACAGAAGAGGTAATTCATTGCATATGTATGTACAACATGGGCTTAATTAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51680.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis