Browse Element(s) Details


Os.23778.1.S1_at

Description gb:AK101934.1
DB_XREF= gi:32987143
TID=Os.23778.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.23778 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033073P11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033073P11, full insert sequence.
FL= gb:AK101934.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3259011/11heat stress transcription factor A3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g32570Os.51680.1.A1_at11/112+19288880..19297378SWI/SNF-related matrix-associated actin-dependent regulatorof chromatin subfamily A member 3-like 2, putative, expressed
LOC_Os02g32570OsAffx.2831.1.S1_at9/112+19288880..19297378SWI/SNF-related matrix-associated actin-dependent regulatorof chromatin subfamily A member 3-like 2, putative, expressed
LOC_Os02g32570OsAffx.2831.1.S1_x_at9/112+19288880..19297378SWI/SNF-related matrix-associated actin-dependent regulatorof chromatin subfamily A member 3-like 2, putative, expressed
LOC_Os02g32580Os.50831.1.S1_at11/112+19297528..19298752expressed protein
LOC_Os02g32590Os.23778.1.S1_at11/112+19303888..19307189heat stress transcription factor A3, putative, expressed
LOC_Os02g32600OsAffx.13151.1.S1_x_at2/112+19316127..19317590expressed protein
LOC_Os02g32610Os.8653.1.S1_at11/112+19319590..19326261Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23778.1.S1_at--1061--9211Chr02:19304448..19304472 (25 bp)
TCCAGGATTGGATGCTACCTCTTCT
LOC_Os02g32590
Os.23778.1.S1_at--125--3771Chr02:19304430..19304454 (25 bp)
CTCTTCTGAAGCTGATTGCCTCGGA
LOC_Os02g32590
Os.23778.1.S1_at--946--6331Chr02:19304385..19304409 (25 bp)
GATGCTTTCTGACTCCATGTTACAA
LOC_Os02g32590
Os.23778.1.S1_at--1160--3451Chr02:19304280..19304304 (25 bp)
CAGTGGCACTAGTCAGCAAGCATAT
LOC_Os02g32590
Os.23778.1.S1_at--890--7851Chr02:19304255..19304279 (25 bp)
GGTAGTCTTGTTAGTGATCCCTATC
LOC_Os02g32590
Os.23778.1.S1_at--786--8071Chr02:19304196..19304220 (25 bp)
GGAGCTCGATTTTCAGGCACTGGAT
LOC_Os02g32590
Os.23778.1.S1_at--468--2871Chr02:19304150..19304174 (25 bp)
AAGTGTGTTATCGATGACCCTGCTC
LOC_Os02g32590
Os.23778.1.S1_at--992--5811Chr02:19304135..19304159 (25 bp)
GACCCTGCTCTTCAGCAACAGAGAG
LOC_Os02g32590
Os.23778.1.S1_at--77--8111Chr02:19304070..19304094 (25 bp)
GGACCTGATGTTTTATCTACCTAAA
LOC_Os02g32590
Os.23778.1.S1_at--249--6771Chr02:19303993..19304017 (25 bp)
GTTAACTCCTGAATATGCGCACTAT
LOC_Os02g32590
Os.23778.1.S1_at--954--111Chr02:19303915..19303939 (25 bp)
ATTCATTCACCCTGCTGTTTTTGAA
LOC_Os02g32590
Target Sequence 
TCCAGGATTGGATGCTACCTCTTCTGAAGCTGATTGCCTCGGANCATNTTCTGACAATATGGGGATGCTTTCTGACTCCA
TGTTACAAACAGCGGGTAAATTGATGGATGCAGATGATGACGAGCGAATTTGGGGCGTCGATGNTTNGTCGGCTTTACAA
AGTTCTTGCAGTGGCACTAGTCAGCAAGCATATGGTAGTCTTGTTAGTGATCCCTATCTGANGGAGATGGCTAATNAGCC
TGAAAAATTCTGGGAGCTCGATTTTCAGGCACTGGATGATGGAGATCTGCANCTGGACAAGTGTGTTATCGATGACCCTG
CTCTTCAGCAACAGAGAGGAAATATGAATTCGTAGATCAAACGCAGCTTGGGAGAGTAGGACCTGATGTTTTATCTACCT
AAAAACTATAGNTCACTATGAACATTGCTATAGTTATTTGATATTCAGGAGGCTTGTTAACTCCTGAATATGCGCACTAT
GGCATTAAGAAGTAGCAGTAGCAGCAGTAGTATGGTTATGCNTTTTGTTTTCCATTCATTCACCCTGCTGTTTTTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23778.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis