Browse Element(s) Details


Os.8653.1.S1_at

Description gb:CB656998
DB_XREF= gi:29660723
DB_XREF=OSJNEc11P14.r
CLONE=OSJNEc11P14
TID=Os.8653.1
CNT=37
FEA=EST
TIER=Stack
STK=12
UG=Os.8653 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with moderate similarity to protein pir:T48400 (A.thaliana) T48400 SERINETHREONINE-PROTEIN KINASE CTR1 - Arabidopsis thaliana
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3261011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g32570Os.51680.1.A1_at11/112+19288880..19297378SWI/SNF-related matrix-associated actin-dependent regulatorof chromatin subfamily A member 3-like 2, putative, expressed
LOC_Os02g32570OsAffx.2831.1.S1_at9/112+19288880..19297378SWI/SNF-related matrix-associated actin-dependent regulatorof chromatin subfamily A member 3-like 2, putative, expressed
LOC_Os02g32570OsAffx.2831.1.S1_x_at9/112+19288880..19297378SWI/SNF-related matrix-associated actin-dependent regulatorof chromatin subfamily A member 3-like 2, putative, expressed
LOC_Os02g32580Os.50831.1.S1_at11/112+19297528..19298752expressed protein
LOC_Os02g32590Os.23778.1.S1_at11/112+19303888..19307189heat stress transcription factor A3, putative, expressed
LOC_Os02g32600OsAffx.13151.1.S1_x_at2/112+19316127..19317590expressed protein
LOC_Os02g32610Os.8653.1.S1_at11/112+19319590..19326261Protein kinase domain containing protein, expressed
LOC_Os02g32620OsAffx.24541.1.S1_at11/112+19336159..19337868D-mannose binding lectin family protein, expressed
LOC_Os02g32630OsAffx.12318.1.S1_at11/112+19339869..19340318hypothetical protein
LOC_Os02g32640NANA2+19344451..19345297NA
LOC_Os02g32650Os.51815.1.S1_at11/112+19346710..19349026expressed protein
LOC_Os02g32650Os.51815.2.S1_x_at11/112+19346710..19349026expressed protein
LOC_Os02g32650Os.51815.2.S1_at9/112+19346710..19349026expressed protein
LOC_Os02g32660Os.6796.1.S1_a_at11/112+19349894..193612591,4-alpha-glucan branching enzyme IIB, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000165biological_processMAPKKK cascade
GO:0006952biological_processdefense response
GO:0008219biological_processcell death
GO:0009414biological_processresponse to water deprivation
GO:0009621biological_processresponse to pathogenic fungi
GO:0009723biological_processresponse to ethylene stimulus
GO:0009744biological_processresponse to sucrose stimulus
GO:0010105biological_processnegative regulation of ethylene mediated signaling pathway
GO:0010182biological_processsugar mediated signaling
GO:0046777biological_processprotein amino acid autophosphorylation
GO:0005789cellular_componentendoplasmic reticulum membrane
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0004709molecular_functionMAP kinase kinase kinase activity
GO:0005515molecular_functionprotein binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8653.1.S1_at--103--4831Chr02:19320350..19320371 (22 bp)
GCTCAGGTTGTAGCAGCTGTTGGTT
LOC_Os02g32610
Os.8653.1.S1_at--402--9091Chr02:19320178..19320284 (25 bp)
TGCTGGACAAAAGAACCCTGGCGAC
LOC_Os02g32610
Os.8653.1.S1_at--202--1871Chr02:19320155..19320179 (25 bp)
ACGACCGTCTTTTGCCAGTATCATG
LOC_Os02g32610
Os.8653.1.S1_at--214--3431Chr02:19320134..19320158 (25 bp)
CATGGAATCCCTGAAACCTCTAATC
LOC_Os02g32610
Os.8653.1.S1_at--340--5471Chr02:19320108..19320132 (25 bp)
GAACTCCCCATCAACTTCAAGAGGA
LOC_Os02g32610
Os.8653.1.S1_at--784--9151Chr02:19320081..19320105 (25 bp)
TCAGTTAACGGTTCATGGGTACCTT
LOC_Os02g32610
Os.8653.1.S1_at--708--2611Chr02:19320053..19320077 (25 bp)
AACCCTGAAGATACGAGCCCTTGAC
LOC_Os02g32610
Os.8653.1.S1_at--935--4851Chr02:19320010..19320034 (25 bp)
GCTATCTTAGTCGTTAACTTCTTAG
LOC_Os02g32610
Os.8653.1.S1_at--750--3451Chr02:19319940..19319964 (25 bp)
CAGTAATATTTTTGCTCCGAAAGCT
LOC_Os02g32610
Os.8653.1.S1_at--459--4891Chr02:19319909..19319933 (25 bp)
GCTTATAGTTATATCTCTTCCCTGG
LOC_Os02g32610
Os.8653.1.S1_at--1017--3651Chr02:19319895..19319919 (25 bp)
CTCTTCCCTGGACGGCTAAATTAGT
LOC_Os02g32610
Target Sequence 
GCTCAGGTTGTAGCAGCTGTTGGTTTTAATGGGCGAAGGCTTGAAATTCCAAGTAGCGTTGATCCAAAAGTGGCGGCAAT
AATGGAATCCTGCTGGACAAAAGAACCCTGGCGACGACCGTCTTTTGCCAGTATCATGGAATCCCTGAAACCTCTAATCA
GAACTCCCCATCAACTTCAAGAGGATATCAGTTAACGGTTCATGGGTACCTTCAAAACCCTGAAGATACGAGCCCTTGAC
AACTTACAAAGGTGACTAGCTATCTTAGTCGTTAACTTCTTAGGTTTGAATTCAGACATTTTTCTTTCTTTTGGCTTCCG
ATTATTGTCAGTAATATTTTTGCTCCGAAAGCTATTTAAGCTTATAGTTATATCTCTTCCCTGGACGGCTAAATTAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8653.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis