Browse Element(s) Details


OsAffx.24541.1.S1_at

Description tigr:9630.m03092
TID=OsAffx.24541.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to S-receptor kinase-like protein - Arabidopsis thaliana
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3262011/11D-mannose binding lectin family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g32600OsAffx.13151.1.S1_x_at2/112+19316127..19317590expressed protein
LOC_Os02g32610Os.8653.1.S1_at11/112+19319590..19326261Protein kinase domain containing protein, expressed
LOC_Os02g32620OsAffx.24541.1.S1_at11/112+19336159..19337868D-mannose binding lectin family protein, expressed
LOC_Os02g32630OsAffx.12318.1.S1_at11/112+19339869..19340318hypothetical protein
LOC_Os02g32640NANA2+19344451..19345297NA
LOC_Os02g32650Os.51815.1.S1_at11/112+19346710..19349026expressed protein
LOC_Os02g32650Os.51815.2.S1_x_at11/112+19346710..19349026expressed protein
LOC_Os02g32650Os.51815.2.S1_at9/112+19346710..19349026expressed protein
LOC_Os02g32660Os.6796.1.S1_a_at11/112+19349894..193612591,4-alpha-glucan branching enzyme IIB, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24541.1.S1_at--776--3251Chr02:19337301..19337325 (25 bp)
CAACGCGACGGACGGCTCGGGATGC
LOC_Os02g32620
OsAffx.24541.1.S1_at--351--8353Chr07:17250725..17250749 (25 bp)
GGCGGGCTGTACTGGGAGGTGCGGA
NONE
OsAffx.24541.1.S1_at--1096--1671Chr02:19337420..19337444 (25 bp)
AGCCGGCGAACAAGGAATTCCTGCC
LOC_Os02g32620
OsAffx.24541.1.S1_at--1062--8371Chr02:19337424..19337448 (25 bp)
GGCGAACAAGGAATTCCTGCCGTTC
LOC_Os02g32620
OsAffx.24541.1.S1_at--331--8391Chr02:19337509..19337533 (25 bp)
GGCGCCGTCTACAGCAACGGCACGG
LOC_Os02g32620
OsAffx.24541.1.S1_at--385--7691Chr02:19337533..19337557 (25 bp)
GGGTACTGCTACCTCATGGACTACC
LOC_Os02g32620
OsAffx.24541.1.S1_at--587--1751Chr02:19337543..19337567 (25 bp)
ACCTCATGGACTACCCGGCGCAGAT
LOC_Os02g32620
OsAffx.24541.1.S1_at--5--851Chr02:19337548..19337572 (25 bp)
ATGGACTACCCGGCGCAGATGATGG
LOC_Os02g32620
OsAffx.24541.1.S1_at--875--8171Chr02:19337735..19337759 (25 bp)
GGAAGCGGAGGTGCCGGACGGCCGT
LOC_Os02g32620
OsAffx.24541.1.S1_at--632--8391Chr02:19337806..19337830 (25 bp)
GGCCCGTACAAGAACCTCGGATCCT
LOC_Os02g32620
OsAffx.24541.1.S1_at--444--7031Chr02:19337811..19337835 (25 bp)
GTACAAGAACCTCGGATCCTTCAGC
LOC_Os02g32620
Target Sequence 
CAACGCGACGGACGGCTCGGGATGCGCCGCCGCAAACGTCGGCGGCGGCGGCGGCCTCTGCGGCCGCACGGGCGGCGAGG
TGGGCGGGCTGTACTGGGAGGTGCGGAGGCAGCGCGTGGAGCCGGCGAACAAGGAATTCCTGCCGTTCGAGCACTCGCCG
TCGGCGGCGGACTGCGAGGTGCGGTGCGCGCGCAACTGCAGCTGCTGGGGCGCCGTCTACAGCAACGGCACGGGGTACTG
CTACCTCATGGACTACCCGGCGCAGATGATGGTGGCCGCCGACGAGAGGAAGGTGGGGTACTTCAAGGTGAGGAGCCTGG
AGGAGGCGGCGGCGGCGAGCGGGGGCGGGAGGGCGGCCGGTGTCAAGGCGGCGCTGCTTGCCGTCGGCGTGACGGTGCTG
GTCGCCGCGGCCGCGTTCGGGGCGTACAGGGTGTGGAAGCGGAGGTGCCGGACGGCCGTGGACGCCAGGCGGCAGGTCGT
CGCCGACGACGAGGGGCTCTCGCCGGGCCCGTACAAGAACCTCGGATCCTTCAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24541.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis