Browse Element(s) Details


OsAffx.12318.1.S1_at

Description tigr:9630.m03093
TID=OsAffx.12318.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3263011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g32600OsAffx.13151.1.S1_x_at2/112+19316127..19317590expressed protein
LOC_Os02g32610Os.8653.1.S1_at11/112+19319590..19326261Protein kinase domain containing protein, expressed
LOC_Os02g32620OsAffx.24541.1.S1_at11/112+19336159..19337868D-mannose binding lectin family protein, expressed
LOC_Os02g32630OsAffx.12318.1.S1_at11/112+19339869..19340318hypothetical protein
LOC_Os02g32640NANA2+19344451..19345297NA
LOC_Os02g32650Os.51815.1.S1_at11/112+19346710..19349026expressed protein
LOC_Os02g32650Os.51815.2.S1_x_at11/112+19346710..19349026expressed protein
LOC_Os02g32650Os.51815.2.S1_at9/112+19346710..19349026expressed protein
LOC_Os02g32660Os.6796.1.S1_a_at11/112+19349894..193612591,4-alpha-glucan branching enzyme IIB, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12318.1.S1_at--53--912Chr05:23031522..23031541 (20 bp)
AGGCGGAAGGGAGTGGCGGCTGTTT
NONE
OsAffx.12318.1.S1_at--37--991Chr02:19339927..19339951 (25 bp)
AGGGAGTGGCGGCTGTTTCGGTGGG
LOC_Os02g32630
OsAffx.12318.1.S1_at--1126--4691Chr02:19340057..19340081 (25 bp)
GCGGCGGTCAGGAGGAGTGGCGATG
LOC_Os02g32630
OsAffx.12318.1.S1_at--100--6731Chr02:19340195..19340219 (25 bp)
GTTCTCCGGCGAGTGTCACGCTCAT
LOC_Os02g32630
OsAffx.12318.1.S1_at--1079--9491Chr02:19340197..19340221 (25 bp)
TCTCCGGCGAGTGTCACGCTCATGG
LOC_Os02g32630
OsAffx.12318.1.S1_at--224--4071Chr02:19340204..19340228 (25 bp)
CGAGTGTCACGCTCATGGCGCTGAT
LOC_Os02g32630
OsAffx.12318.1.S1_at--98--6131Chr02:19340205..19340229 (25 bp)
GAGTGTCACGCTCATGGCGCTGATC
LOC_Os02g32630
OsAffx.12318.1.S1_at--361--7451Chr02:19340207..19340231 (25 bp)
GTGTCACGCTCATGGCGCTGATCGA
LOC_Os02g32630
OsAffx.12318.1.S1_at--500--8731Chr02:19340208..19340232 (25 bp)
TGTCACGCTCATGGCGCTGATCGAC
LOC_Os02g32630
OsAffx.12318.1.S1_at--95--1851Chr02:19340212..19340236 (25 bp)
ACGCTCATGGCGCTGATCGACGAGA
LOC_Os02g32630
OsAffx.12318.1.S1_at--470--4831Chr02:19340214..19340238 (25 bp)
GCTCATGGCGCTGATCGACGAGATG
LOC_Os02g32630
Target Sequence 
AGGCGGAAGGGAGTGGCGGCTGTTTCGGTGGGGACGAAGCAGTGGGGGGCGGCGGCAGTCGGTGGCCATGGGGACGAGGC
GGTGGGGAGTGACATCTGTGGTGGTGGGGACGAGGCGGAGGGGAGTGACGGCAGGGAGCGGCGGTCAGGAGGAGTGGCGA
TGGTGGTGGGGACGAGGCGGAGGGGAGCGGCGACGGCTGTGGCGGTGGGGAGCGGCGGCTGTGGCCGTGGGGACGAGACG
GAGAGGAGCGGTGGTAGCTGTGGGTGTGGGGAGCGGTTCTCCGGCGAGTGTCACGCTCATGGCGCTGATCGACGAGATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12318.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis