Browse Element(s) Details


Os.6796.1.S1_a_at

Description gb:D16201.1
DB_XREF= gi:436051
TID=Os.6796.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6796 (NCBI UniGene Cluster)
DEF=Oryza sativa mRNA for branching enzyme-3, complete cds.
PROD=branching enzyme-3 precursor
FL= gb:D16201.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3266011/111,4-alpha-glucan branching enzyme IIB, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g32610Os.8653.1.S1_at11/112+19319590..19326261Protein kinase domain containing protein, expressed
LOC_Os02g32620OsAffx.24541.1.S1_at11/112+19336159..19337868D-mannose binding lectin family protein, expressed
LOC_Os02g32630OsAffx.12318.1.S1_at11/112+19339869..19340318hypothetical protein
LOC_Os02g32640NANA2+19344451..19345297NA
LOC_Os02g32650Os.51815.1.S1_at11/112+19346710..19349026expressed protein
LOC_Os02g32650Os.51815.2.S1_x_at11/112+19346710..19349026expressed protein
LOC_Os02g32650Os.51815.2.S1_at9/112+19346710..19349026expressed protein
LOC_Os02g32660Os.6796.1.S1_a_at11/112+19349894..193612591,4-alpha-glucan branching enzyme IIB, chloroplast precursor, putative, expressed
LOC_Os02g32670OsAffx.24542.1.S1_x_at9/112+19369601..19379945expressed protein
LOC_Os02g32680NANA2+19383169..19383654lectin receptor-type protein kinase, putative

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Gene Ontology Classification
GO idTypeName
GO:0005975biological_processcarbohydrate metabolism
GO:0010021biological_processamylopectin biosynthesis
GO:0003844molecular_function1,4-alpha-glucan branching enzyme activity
GO:0004556molecular_functionalpha-amylase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6796.1.S1_a_at--1000--3391Chr02:19351121..19351145 (25 bp)
CAGCTATTTTGACTACCGTGTTGGT
LOC_Os02g32660
Os.6796.1.S1_a_at--248--8131Chr02:19350439..19350463 (25 bp)
GGACTCAGATGCTGGACTCTTTGGT
LOC_Os02g32660
Os.6796.1.S1_a_at--575--2051Chr02:19350305..19350407 (25 bp)
ACTTCACTGCCGATTGTTCACATGA
LOC_Os02g32660
Os.6796.1.S1_a_at--927--9391Chr02:19350267..19350291 (25 bp)
TCGTTCTCAGTTTATTCTCCTAGCA
LOC_Os02g32660
Os.6796.1.S1_a_at--993--1431Chr02:19350243..19350267 (25 bp)
AGAACCTGCGTTGTCTATGCTCCAG
LOC_Os02g32660
Os.6796.1.S1_a_at--513--5191Chr02:19350141..19350165 (25 bp)
GCAATCTGTGAACGGCTTTCCTAGG
LOC_Os02g32660
Os.6796.1.S1_a_at--37--7911Chr02:19350118..19350142 (25 bp)
GGTTCTGCTTCGATGAATGCCGGAT
LOC_Os02g32660
Os.6796.1.S1_a_at--691--1411Chr02:19350088..19350112 (25 bp)
AGACAGCTTGCTTTTGTGCTTTGCG
LOC_Os02g32660
Os.6796.1.S1_a_at--974--3671Chr02:19350070..19350094 (25 bp)
CTTTGCGCTCCCAATTTGTAGTTTT
LOC_Os02g32660
Os.6796.1.S1_a_at--112--151Chr02:19350014..19350038 (25 bp)
ATTATCTATGGCTGTCGAACGGCGA
LOC_Os02g32660
Os.6796.1.S1_a_at--320--7851Chr02:19349962..19349986 (25 bp)
GGTACCGTTCGAACTGCCAGTTATA
LOC_Os02g32660
Target Sequence 
CAGCTATTTTGACTACCGTGTTGGTTGTTTAAAGCCAGGGAAATATAAGGTGGTCTTGGACTCAGATGCTGGACTCTTTG
GTGGATTTGGCAGGATCCATCACACTGCAGAGCACTTCACTGCCGATTGTTCACATGACAACAGGCCCTACTCGTTCTCA
GTTTATTCTCCTAGCAGAACCTGCGTTGTCTATGCTCCAGCGGAATGAGAACACCAAGAGGCAGCATGCAAGTGTGTGCG
GCTGCTAGTGCGAAGGAGCAAGAAAAACTAGTTGCCAGCAATCTGTGAACGGCTTTCCTAGGTTCTGCTTCGATGAATGC
CGGATAGACTAGACAGCTTGCTTTTGTGCTTTGCGCTCCCAATTTGTAGTTTTAGTTTGTGAGGGAAAGAAACGTTTATT
TGTAATTATCTATGGCTGTCGAACGGCGACGAAACCATGAACCCCGTATATTTGTTGGTACCGTTCGAACTGCCAGTTAT
A

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6796.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis