Browse Element(s) Details


OsAffx.24542.1.S1_x_at

Description tigr:9630.m03099
TID=OsAffx.24542.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g326709/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g32640NANA2+19344451..19345297NA
LOC_Os02g32650Os.51815.1.S1_at11/112+19346710..19349026expressed protein
LOC_Os02g32650Os.51815.2.S1_x_at11/112+19346710..19349026expressed protein
LOC_Os02g32650Os.51815.2.S1_at9/112+19346710..19349026expressed protein
LOC_Os02g32660Os.6796.1.S1_a_at11/112+19349894..193612591,4-alpha-glucan branching enzyme IIB, chloroplast precursor, putative, expressed
LOC_Os02g32670OsAffx.24542.1.S1_x_at9/112+19369601..19379945expressed protein
LOC_Os02g32680NANA2+19383169..19383654lectin receptor-type protein kinase, putative
LOC_Os02g32690OsAffx.24543.1.S1_at11/112+19399544..19414868ABC transporter family protein, putative, expressed
LOC_Os02g32690Os.54482.1.S1_x_at7/112+19399544..19414868ABC transporter family protein, putative, expressed
LOC_Os02g32690OsAffx.32212.1.A1_at2/112+19399544..19414868ABC transporter family protein, putative, expressed
LOC_Os02g32690Os.54482.1.S1_at1/112+19399544..19414868ABC transporter family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24542.1.S1_x_at--279--5171Chr02:19379317..19379341 (25 bp)
GCAAGCTCCAGCTATTCCTGATGAT
LOC_Os02g32670
OsAffx.24542.1.S1_x_at--27--9931Chr02:19379349..19379373 (25 bp)
TACTGGCTCATGCATCTGGCTCAAA
LOC_Os02g32670
OsAffx.24542.1.S1_x_at--995--2351Chr02:19379552..19379641 (25 bp)
AAACCACTGTTAGCCTGTCAGCTGA
LOC_Os02g32670
OsAffx.24542.1.S1_x_at--527--7111Chr02:19379633..19379657 (25 bp)
GTCAGCTGACGCTTGATCCAGTATA
LOC_Os02g32670
OsAffx.24542.1.S1_x_at--1026--2811Chr02:19379689..19379713 (25 bp)
AAGTTGTAGCATCTTCGTCTGCCTG
LOC_Os02g32670
OsAffx.24542.1.S1_x_at--157--9131Chr02:19379734..19379758 (25 bp)
TGCTGTCTTTGCCATATGTCTGAAC
LOC_Os02g32670
OsAffx.24542.1.S1_x_at--690--6651Chr02:19379774..19379798 (25 bp)
GTTGATCTCCAGCTATTACTTCTTA
LOC_Os02g32670
OsAffx.24542.1.S1_x_at--345--5592Chr02:19379808..19379832 (25 bp)
GAAATTATTGTTCCCATCTCTTTTG
LOC_Os02g32670
OsAffx.24542.1.S1_x_at--814--10171Chr02:19379879..19379903 (25 bp)
TATAGTCCAACCACGTGCTCAAAGT
LOC_Os02g32670
OsAffx.24542.1.S1_x_at--965--2131Chr02:19379946..19379970 (25 bp)
ACAGTTGGCATTGGCTTAGCTCCAT
NONE
OsAffx.24542.1.S1_x_at--1023--10451Chr02:19379961..19379985 (25 bp)
TTAGCTCCATGATACCTTCTCAGGT
NONE
Target Sequence 
GCAAGCTCCAGCTATTCCTGATGATGATACACTACTGGCTCATGCATCTGGCTCAAAGAGCAAGTCTAGGAAGAGAGGTC
CTCCTTCTCAAGCACCACCAGCAGTTAAGAAACTATTCAAGGAAGGTGACAGCGATGAGAAAGAAACCACTGTTAGCCTG
TCAGCTGACGCTTGATCCAGTATACATGCATGCCCACTCAAGCATTTTGGCCACCAAGTTGTAGCATCTTCGTCTGCCTG
AACCGAAGCGCATGGAAGAATGCTGTCTTTGCCATATGTCTGAACCTTTTGCTATAAACTGTTGATCTCCAGCTATTACT
TCTTAGTGACTTTCGAAATTATTGTTCCCATCTCTTTTGGAACCATCTTTAGCAATGTTTGTAAGCTTATTATGGTTACA
TTAGCTATAGTCCAACCACGTGCTCAAAGTCCATTACAGTTGCCAATATGTCAGTACGGCAATGGACTTTGAACAGTTGG
CATTGGCTTAGCTCCATGATACCTTCTCAGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24542.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis