Browse Element(s) Details


OsAffx.24543.1.S1_at

Description tigr:9630.m03101
TID=OsAffx.24543.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=ABC transporter, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3269011/11ABC transporter family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g32670OsAffx.24542.1.S1_x_at9/112+19369601..19379945expressed protein
LOC_Os02g32680NANA2+19383169..19383654lectin receptor-type protein kinase, putative
LOC_Os02g32690OsAffx.24543.1.S1_at11/112+19399544..19414868ABC transporter family protein, putative, expressed
LOC_Os02g32690Os.54482.1.S1_x_at7/112+19399544..19414868ABC transporter family protein, putative, expressed
LOC_Os02g32690OsAffx.32212.1.A1_at2/112+19399544..19414868ABC transporter family protein, putative, expressed
LOC_Os02g32690Os.54482.1.S1_at1/112+19399544..19414868ABC transporter family protein, putative, expressed
LOC_Os02g32700Os.20902.1.A1_at1/112+19417381..19418082Autophagy-related protein 8 precursor, putative
LOC_Os02g32710OsAffx.2833.1.S1_at11/112+19425060..19426795hypothetical protein
LOC_Os02g32720NANA2+19427742..19428566hypothetical protein
LOC_Os02g32730Os.8133.1.S1_at11/112+19431875..19436229alkaline/neutral invertase, putative, expressed
LOC_Os02g32740Os.9621.1.S1_at11/112+19438167..19440545SNAP25 homologous protein SNAP30, putative, expressed
LOC_Os02g32740OsAffx.2558.1.S1_s_at1/112+19438167..19440545SNAP25 homologous protein SNAP30, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0042626molecular_functionATPase activity, coupled to transmembrane movement of substances
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24543.1.S1_at--976--7531Chr02:19400178..19400202 (25 bp)
GTGGCATCTATATTGGCATCCATGT
LOC_Os02g32690
OsAffx.24543.1.S1_at--73--771Chr02:19400133..19400157 (25 bp)
ATGTCTGGCTTCATCGTGCCTGCAC
LOC_Os02g32690
OsAffx.24543.1.S1_at--1156--6491Chr02:19399985..19400009 (25 bp)
GATATGGTTGTACTACACTTCCCCA
LOC_Os02g32690
OsAffx.24543.1.S1_at--465--8711Chr02:19399959..19399983 (25 bp)
TGTCGTGGACACTCAACGTTTTCTT
LOC_Os02g32690
OsAffx.24543.1.S1_at--2--6011Chr02:19399887..19399911 (25 bp)
GAGAGACTAAATCTGTGGCCGCCTT
LOC_Os02g32690
OsAffx.24543.1.S1_at--979--7531Chr02:19399873..19399897 (25 bp)
GTGGCCGCCTTCATTAAGGATTACT
LOC_Os02g32690
OsAffx.24543.1.S1_at--566--9771Chr02:19399859..19399883 (25 bp)
TAAGGATTACTTCGGTTTCCGCCAT
LOC_Os02g32690
OsAffx.24543.1.S1_at--973--3811Chr02:19399828..19399852 (25 bp)
CTGCCACTAGCAGCCATAATTTTGG
LOC_Os02g32690
OsAffx.24543.1.S1_at--68--371Chr02:19399813..19399837 (25 bp)
ATAATTTTGGCCATGTTTCCCATCC
LOC_Os02g32690
OsAffx.24543.1.S1_at--615--10291Chr02:19399786..19399810 (25 bp)
TTTGCCATCCTTTTTGGTCTCAGCA
LOC_Os02g32690
OsAffx.24543.1.S1_at--860--451Chr02:19399762..19399786 (25 bp)
ATCTCCAAGCTCAACTTCCAAAGGC
LOC_Os02g32690
Target Sequence 
GTGGCATCTATATTGGCATCCATGTTCTACACCCTGCAGAACCTCATGTCTGGCTTCATCGTGCCTGCACCACAAATTCC
AAGATGGTGGATATGGTTGTACTACACTTCCCCATTGTCGTGGACACTCAACGTTTTCTTTACCACACAATTTGGGGATG
AGCATCAGAAGGAGATTTCTGTATTTGGAGAGACTAAATCTGTGGCCGCCTTCATTAAGGATTACTTCGGTTTCCGCCAT
GACCTACTGCCACTAGCAGCCATAATTTTGGCCATGTTTCCCATCCTGTTTGCCATCCTTTTTGGTCTCAGCATCTCCAA
GCTCAACTTCCAAAGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24543.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis