Browse Element(s) Details


Os.9621.1.S1_at

Description gb:AK069978.1
DB_XREF= gi:32980002
TID=Os.9621.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9621 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023037P10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023037P10, full insert sequence.
FL= gb:AK069978.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3274011/11SNAP25 homologous protein SNAP30, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g32690OsAffx.24543.1.S1_at11/112+19399544..19414868ABC transporter family protein, putative, expressed
LOC_Os02g32690Os.54482.1.S1_x_at7/112+19399544..19414868ABC transporter family protein, putative, expressed
LOC_Os02g32690OsAffx.32212.1.A1_at2/112+19399544..19414868ABC transporter family protein, putative, expressed
LOC_Os02g32690Os.54482.1.S1_at1/112+19399544..19414868ABC transporter family protein, putative, expressed
LOC_Os02g32700Os.20902.1.A1_at1/112+19417381..19418082Autophagy-related protein 8 precursor, putative
LOC_Os02g32710OsAffx.2833.1.S1_at11/112+19425060..19426795hypothetical protein
LOC_Os02g32720NANA2+19427742..19428566hypothetical protein
LOC_Os02g32730Os.8133.1.S1_at11/112+19431875..19436229alkaline/neutral invertase, putative, expressed
LOC_Os02g32740Os.9621.1.S1_at11/112+19438167..19440545SNAP25 homologous protein SNAP30, putative, expressed
LOC_Os02g32740OsAffx.2558.1.S1_s_at1/112+19438167..19440545SNAP25 homologous protein SNAP30, putative, expressed
LOC_Os02g32750Os.9390.1.S1_at11/112+19445712..19447713Glycosyltransferase 5, putative, expressed
LOC_Os02g32760Os.50384.1.S1_at10/112+19449303..1945248260S acidic ribosomal protein P2A, putative, expressed
LOC_Os02g32770OsAffx.24544.1.S1_at11/112+19453356..19457493Cytochrome P450 family protein, expressed
LOC_Os02g32780Os.23687.1.A1_at11/112+19460445..19463482pentatricopeptide, putative, expressed
LOC_Os02g32790OsAffx.24545.1.S1_at11/112+19463754..19464644hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0000911biological_processcytokinesis by cell plate formation
GO:0006944biological_processmembrane fusion
GO:0009612biological_processresponse to mechanical stimulus
GO:0009613biological_processresponse to pest, pathogen or parasite
GO:0016192biological_processvesicle-mediated transport
GO:0000299cellular_componentintegral to membrane of membrane fraction
GO:0005886cellular_componentplasma membrane
GO:0009504cellular_componentcell plate
GO:0005484molecular_functionSNAP receptor activity
GO:0005486molecular_functiont-SNARE activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9621.1.S1_at--198--4331Chr02:19439429..19439556 (25 bp)
CCATGTCTCGGATGATTCCTTCAAA
LOC_Os02g32740
Os.9621.1.S1_at--238--4551Chr02:19439600..19439624 (25 bp)
GCCCTAGTGGGAAGTCGGCTAATCG
LOC_Os02g32740
Os.9621.1.S1_at--586--7991Chr02:19439788..19439812 (25 bp)
GGATGATGCCCTAGATGATCTCAGT
LOC_Os02g32740
Os.9621.1.S1_at--720--2451Chr02:19440203..19440227 (25 bp)
AACAAAGCGCTGGATGATCTGCAAG
LOC_Os02g32740
Os.9621.1.S1_at--502--5951Chr02:19440261..19440285 (25 bp)
GAGCAAACCAACGTGCACGCAAGCT
LOC_Os02g32740
Os.9621.1.S1_at--180--2411Chr02:19440304..19440328 (25 bp)
AAACATGGGACGATCAGCTTTGCCT
LOC_Os02g32740
Os.9621.1.S1_at--1081--6431Chr02:19440315..19440339 (25 bp)
GATCAGCTTTGCCTAATTGCCTTGA
LOC_Os02g32740
Os.9621.1.S1_at--847--71Chr02:19440330..19440354 (25 bp)
ATTGCCTTGATCTGCAGTGCATTGG
LOC_Os02g32740
Os.9621.1.S1_at--273--8791Chr02:19440361..19440385 (25 bp)
TGTTAAAAGAGTCGTCCTCGCTGGC
LOC_Os02g32740
Os.9621.1.S1_at--214--8512Chr02:19440382..19440406 (25 bp)
TGGCACAGCTTCTGCTTATCAATTA
LOC_Os02g32740
Os.9621.1.S1_at--426--3351Chr02:19440464..19440488 (25 bp)
CACGATGGCTGTTTTCTTGACGATC
LOC_Os02g32740
Target Sequence 
CCATGTCTCGGATGATTCCTTCAAAAAGAAGGCGAGCCACATCGAGCAGAGGGAGAAGCTAGGGCTGAGCCCTAGTGGGA
AGTCGGCTAATCGCANNTACGCCGAGCCTACCACCGCCATGGAGAAAGTTCAGGTGGAGAAACAAAAGCAGGATGATGCC
CTAGATGATCTCAGTGGTGTGCTTGGGCAGCTCAAGGGCATGGCTTGTGACATGGGTTCAGAGCTTGATAGGCAAAACAA
AGCGCTGGATGATCTGCAAGGCGATGTGGATGAACTCAACTCGAGGGTGAAAGGAGCAAACCAACGTGCACGCAAGCTAA
TCGAGAAGTAGGCTGGAAACATGGGACGATCAGCTTTGCCTAATTGCCTTGATCTGCAGTGCATTGGGGAAAATGTTAAA
AGAGTCGTCCTCGCTGGCACAGCTTCTGCTTATCAATTAACTGGGTTTTGTTTTGTATTACCGGGGGCATATATATTTTT
TCTGTTTCTTAATTTTCACGATGGCTGTTTTCTTGACGATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9621.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis