Browse Element(s) Details


Os.20902.1.A1_at

Description gb:CF337464
DB_XREF= gi:33823327
DB_XREF=JMT--07-O13.g1
CLONE=JMT--07-O13
TID=Os.20902.1
CNT=3
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.20902 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with moderate similarity to protein ref:NP_566518.1 (A.thaliana) expressed protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g010109/11Gamma-aminobutyric acid receptor-associated protein-like 2, putative, expressed
LOC_Os02g327001/11Autophagy-related protein 8 precursor, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g01010Os.20902.1.A1_at9/1111+162..3164Gamma-aminobutyric acid receptor-associated protein-like 2, putative, expressed
LOC_Os11g01020Os.18160.1.S1_s_at7/1111+3260..5993RNA recognition motif family protein, expressed
LOC_Os11g01030OsAffx.19438.1.S1_at11/1111+6037..9062expressed protein
LOC_Os11g01030OsAffx.19438.2.S1_x_at3/1111+6037..9062expressed protein
LOC_Os11g01040Os.51042.1.S1_at11/1111+13301..14796hydrolase, alpha/beta fold family protein, expressed
LOC_Os11g01050OsAffx.30757.1.S1_at11/1111+26139..27608Exo70 exocyst complex subunit family protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006914biological_processautophagy
GO:0005737cellular_componentcytoplasm
GO:0005775cellular_componentvacuolar lumen
GO:0005776cellular_componentautophagic vacuole
GO:0008017molecular_functionmicrotubule binding
GO:0019776molecular_functionAPG8 conjugating enzyme activity
GO:0019779molecular_functionAPG8 activating enzyme activity
GO:0019786molecular_functionAPG8-specific protease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20902.1.A1_at--342--10771Chr11:1050..1074 (25 bp)
TTGTTGGTCACGCTTGCCGCTGCCA
LOC_Os11g01010
Os.20902.1.A1_at--761--9192Chr11:1030..1054 (25 bp)
TGCCATTGCCGAACTATCGCCTGTC
LOC_Os11g01010
Os.20902.1.A1_at--979--532Chr11:1015..1039 (25 bp)
ATCGCCTGTCTCTCACGCCATGGAA
LOC_Os11g01010
Os.20902.1.A1_at--36--3112Chr11:719..743 (25 bp)
AATTTTCGAGGAGTAATCTTCCAGA
LOC_Os11g01010
Os.20902.1.A1_at--604--10551Chr11:569..593 (25 bp)
TTCATACTTCGTTCCAGGCTACATT
LOC_Os11g01010
Os.20902.1.A1_at--1103--10611Chr11:562..586 (25 bp)
TTCGTTCCAGGCTACATTTGTCTCC
LOC_Os11g01010
Os.20902.1.A1_at--1098--9311Chr11:542..566 (25 bp)
TCTCCAGGGACAGCGTTGTTTGTGT
LOC_Os11g01010
Os.20902.1.A1_at--822--7512Chr11:300..324 (25 bp)
GTGGAGATCTGCTTTTACCTCGGGC
LOC_Os11g01010
Os.20902.1.A1_at--864--10412Chr11:286..310 (25 bp)
TTACCTCGGGCGTCAATAATATATG
LOC_Os11g01010
Os.20902.1.A1_at--319--3572Chr11:162..186 (25 bp)
CATACCGAACTTAATTATCCCACCT
NONE
Os.20902.1.A1_at--513--10432Chr11:148..172 (25 bp)
TTATCCCACCTAAATTTGTGAGGCA
NONE
Target Sequence 
TTGTTGGTCACGCTTGCCGCTGCCATTGCCGAACTATCGCCTGTCTCTCACGCCATGGAAGAGAGGAGGAAGGAGAAAGG
GAAAGAAGGGGAAAAGGGCAGGTCATTGTTGAGAAATTTTCGAGGAGTAATCTTCCAGAAATGGAGAAGCGCAAGTACCT
GGTTCCATGTAACATGCCAGTTGGGCAGTTTATTTTCATACTTCGTTCCAGGCTACATTTGTCTCCAGGGACAGCGTTGT
TTGTGTTTGTCAACAACACTTTGCCCCAGACTGCTCAGCTGATGGGCAGTGTGTATGAGTCATACAAAGATGAGGGCGAT
GGCTTCCTCTACTTGTGCTACAGCAGCGAGAAGACATTCGGTTGACCAACTCCTCCGTGGAGATCTGCTTTTACCTCGGG
CGTCAATAATATATGCATGTATATATATTACTATGATTAGAAATTNCAATTATGTGTTTTATATACTGTATATTGATTGA
TGTGAATGAAGTGTTACAAGGAGGANAAAAGTTTCATACCGAACTTAATTATCCCACCTAAATTTGTGAGGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20902.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis