Browse Element(s) Details


Os.18160.1.S1_s_at

Description gb:AK061492.1
DB_XREF= gi:32971510
TID=Os.18160.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18160 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013153E18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-309-B07, full insert sequence.
FL= gb:AK061492.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0101011/11RNA recognition motif family protein, expressed
LOC_Os11g010207/11RNA recognition motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g01010Os.18160.1.S1_s_at11/1112+1760..4428RNA recognition motif family protein, expressed
LOC_Os12g01020OsAffx.19438.1.S1_at11/1112+4477..7440hypothetical protein
LOC_Os12g01020OsAffx.19438.2.S1_x_at3/1112+4477..7440hypothetical protein
LOC_Os12g01030Os.51042.1.S1_at8/1112+11806..13099hydrolase, alpha/beta fold family protein
LOC_Os12g01040OsAffx.30757.1.S1_at11/1112+24538..26007Exo70 exocyst complex subunit family protein
LOC_Os12g01050OsAffx.30758.1.S1_at11/1112+27025..28438hypothetical protein
LOC_Os12g01050Os.27037.1.A1_at1/1112+27025..28438hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0003676molecular_functionnucleic acid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18160.1.S1_s_at--42--9452Chr12:4016..4040 (25 bp)
TCGGAAGATTTCTGCTGAAGACCTG
LOC_Os12g01010
Os.18160.1.S1_s_at--807--8932Chr12:4046..4070 (25 bp)
TGACTTGGACAAGTACCATGCGGAA
LOC_Os12g01010
Os.18160.1.S1_s_at--1161--2991Chr12:4079..4103 (25 bp)
AATGAGCTAGATGACCCTCACGCTT
LOC_Os12g01010
Os.18160.1.S1_s_at--34--1851Chr12:4098..4122 (25 bp)
ACGCTTTGTTGCCTTGCCTTGATTG
LOC_Os12g01010
Os.18160.1.S1_s_at--1123--4313Chr12:4160..4184 (25 bp)
CCTTGGTCTCCTTGTTAGTATTTTG
LOC_Os12g01010
Os.18160.1.S1_s_at--717--6912Chr12:4184..4208 (25 bp)
GTAGGGATAGATGCAGACCAACATA
LOC_Os12g01010
Os.18160.1.S1_s_at--316--9812Chr12:4261..4285 (25 bp)
TAACCTGGTAGGTAGAAGCTAGCTC
LOC_Os12g01010
Os.18160.1.S1_s_at--61--3332Chr12:4297..4321 (25 bp)
CACGGAGGGAGCACAACTTTGAACT
LOC_Os12g01010
Os.18160.1.S1_s_at--1027--8952Chr12:4336..4360 (25 bp)
TGAACTTTTAGCTAGTGTGGGACTG
LOC_Os12g01010
Os.18160.1.S1_s_at--1088--7472Chr12:4360..4384 (25 bp)
GTGGGTTGATGGACACACAAGCAAA
LOC_Os12g01010
Os.18160.1.S1_s_at--795--2712Chr12:4387..4411 (25 bp)
AAGCATGCAGCTTGGCAGCCTGGCA
LOC_Os12g01010
Target Sequence 
TCGGAAGATTTCTGCTGAAGACCTGGATGCTGACTTGGACAAGTACCATGCGGAAGGAATGCAAATGAGCTAGATGACCC
TCACGCTTTGTTGCCTTGCCTTGATTGCATTAGGTAGAGACAGGGGGACAAACTAGTAGGCCTTCCTTGGTCTCCTTGTT
AGTATTTTGTAGGGATAGATGCAGACCAACATATGTATACTTTGTTTAGATGGTGTCATAATTTTGAGCAGGGAATGGCT
AAGCTTAACCTGGTAGGTAGAAGCTAGCTCATAATATGTAACACGGAGGGAGCACAACTTTGAACTTTTATAGCTAGTGT
TGAACTTTTAGCTAGTGTGGGACTGTGGGTTGATGGACACACAAGCAAAGCAAGCATGCAGCTTGGCAGCCTGGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18160.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis